MmuINT0084246 @ mm10
Intron Retention
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:123966631-123972231:+
Coord C1 exon
chr14:123966631-123966777
Coord A exon
chr14:123966778-123972117
Coord C2 exon
chr14:123972118-123972231
Length
5340 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AACACCCTTTGTGATTTCAGGTT
3' ss Score
7.48
Exon sequences
Seq C1 exon
GCCATGGCATGTGCTCCTGTGGTCGCTGTGTTTGTGAGAAAGGATGGTTTGGTAAGCTCTGCCAACACCTGCGGAAGTGTAATATGACAGAAGAACAAAGCAGGAGTCTGTGTGAGTCAGCAGATGGCACATTGTGCTCAGGGAAGG
Seq A exon
GTGAGTATCACTGTCAGAGTCTGGACTGAATGTCTTTTCAGACATGAGGTACCTCAGAACAGCAGGTAGCAAACAGAATAAACTTTGTCTGAGAAAAGCCACTAAGCTTGTGTGTGAACCTTGAAAGTAGAGCATCAGCAACAGGAGATATGGGAGCTGAGTTTTTGTCTGTGCAAAAGATGGAAGGATCTTCCTCAAGTTTTCACAAATGAAGACTTCATTCATGTTAAAACACAGGTGTGGTTTTTAAAATATATTTTGTTTAGAACCTCATCATAAATAGGCTTTTACTGAGTGATGCCCAGTTGCAAATACCATAAGAATGCACAAAATTAGATTCCCCAGTGCGAGAGTTACAGTTTATTTATTCCCTAACCTGACTTTTATGCAAAATTACTCACTAAAAACTACAAACATTGAGTCCTCATTACAGTTTCAGAATTCTCAGCTAGGCAATCGCATATAGAAGTGCAGTAAATAAATAAATAAGTAAATAAACAAAGCAAAAAATCACAGTTGAGGGATTCTGGAGAGAGGGCTCAGCAATTAAGAGCATTTGCTGTTTCTAATACTCACATTGAGTAACTCGGAACTGCAACAGTTATACTAGATGGAGGGGATCAAATACTCTCTTCTTACTTGCATGATGCTTTCTCTCATGTGCACTGAATCTGCACATACATAATTTTCAATGAGATAAATCTTTTTCAAAAAACTGAAAAAGTACAAAATTTGATTAAGTACTGACACAAAGGTATTTCCTCATGACCAAATCCAACACAAATCAATATTTAATGCTTTCTCAGTTATTTGCTTTGGGTGGTGGGAAGACAATGAAAGATCAACAAAGGTTGAGAATTTACAATTTCTAAGTAGATAGAATGCTTGGGTATGGCTAAATTCAGAGGAATGTAAAGGCTTCCCAGAGCTTTCCATTTTGAATTTCATAGCTCACATTAACGGTGGGCAGCAGGTAACTGAAGATTATTTCTTTTCCTTTCTTCTGGCATTCATTCTGGGTTATAGAAGAAAGGGCCGAGGATGAGCTCTTGCAACTGTAATTTGTCTTTATTATAGAGAATAACAAGGATGTTATTCCTGGTCTCCATGGAGAGCATCATCCCACAGTTCACCTCAAGAACTACAATAAAAATGTAGCATGTGAGAGGCTGTATTTCATGTATTTCAAGCATGGTGAATGAGAAAGATGCCCTCACATCCTTCTACTCTGTATCCTTGATAAATCTCATGGACTTGTCTGAATTCTGTATAATTTTTCCAAAATCCACACCGGAAAACCCTCGTCCTGGTAATCTCAAAGTATATATAAAAAAAAGTATATTTACCCACTTGCCAGGTACTGGTGTGAGTCAGAGATTGGCTTGTGACTGCATGCCAATATACTTTAGAACCCATCCCTACTGAAATGACAAGTGCGAACGTCGCACTTGCTGGGAACTGGGAATAAAGCCATCACTTCAGGAGACGATGAGGAAATAGCATTTTATTTCTTACAAATTTATAGCCAAGACAATAAATCACTCCATAGAAAAATTTAAAACAAGATACATTTTTGTGACCTTCATAACAGATGGTGTCATTAGTACAATAGTGAAAACTGCCTGCTGGGGTATCAGGTTGCAGCATTTTTTCAGGCTTGATGTATGAAGAGTAAAGTCAGTAATGGAATGCGGCCTTAACCCCTGACAGAAATTGTCTTTGAAAATGACCAAAAGAGATATGCTTAGTGGCCATGTTGCCCCTAAGTTTAGCTACCTTTGCAGAATATATGGTGACATTTATAATGATTTATGTTCATTTATTGGCTTAGGGGTTTGTTTATTTATATATTTATTTATTTATTTATTTATTTAGCTCCGTGGTGACACAATAATGTGTTCTTCTTGACAACGTTACCCTAGATTCAAGTAATCACTCCATATTTTTAGAGACACGATTATGGAACACATCTTTAAATGTATCTTTAACCTGTCGTGGTGATATTGCTGCATCCAGGTCATTAGTAAGTTTAGGGTGCCCTTCTTCATTCATCTGTTCCTCTGCTACATCCTTTCTGACTGTTCAGAAAAGAGAACAGGAAAATGCTATACTTGTCAAGACCAACCTTAACGTAGTGTTCTAGTTGACATTCCCAGATGGCTGCTAGCCAGATCTGTAGGCAAGAATTGCTCATTTATGAAACTATATAAATGTTTTTGCTGTGATAGTCATCACAGATTAGATAGGTGAGTAGGTGGTAGATTAAATCAGATTAAGATAGTTTGTTAGAGACAGCATTCTCCAGCTGATATGAGGCCCCCAACACACATACAGTAGAGGACTTCCGGGTCTGTGTTCACTAAGAGATGATGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAGTTCAGAGGTCAGGTCGGGTGGGGAAGTGGAGGCATCCACATGGAGATGGTGTATGGTAGGGAAGAGGTGTGGGATGTGGAGCAGTCAGAGGGTGGATGGGAGGGGTGGGGAATGGAATACGGAGTGTAAAAAATAAAAAATAAGAGAAAAGATAGTCTGTCAGCTGTTTTTGGAAAGTGGTCTGAGGCAATTCCCCCATCCTCTCTGGTATTCCATTCTCATCTTCAGGGAAAGTTTTTGTTTGTTTGTTTTCTCCTCCTTAGGTCTTTGGAATATTCTACGAGTAGATGAAAAAAAGAATTGCCCAATAATAAAAGCCAGAAAAACAGAGACATTGTTAAAAGTCCTTTTAGAGAATAAAATCAAATGGATTAGTGGTGGTGATTTTCCAGGTTTATCCCCTAGGGTTCTGACAGGATGGGCCAGTTGCAGTCTATGGCTGGGCTGCTGTTCCAATGGAAATGGGTCCAAGTCTGCTGAGTCAAACAGTTGTTCATTTCTGAGTGTTCAGGAAACTTATTTTGTTAGACAGAATCTTCTACTCATGCTTTTCCCCTTTCTAGAGAGGGATAATCCACCCCTGTTATTGTAAGAACAGCCAGAGCTCTCTATAATAAAGATCTATAATAGGTCCTAATGACTGCATACACTGTGTTAGTACTACATGGTATACTGTTCCTATTTATGTAAGAAGTAGAAACTTTTTCCACTTACCATCAACAAACAGAAAAACAACACACCTGCAATTATGGTGAACACGAAAATTGCTTCCATGACATACATAAAATCAAACTCCGGTTTTATTCTCACCATTTCATGACATCTACTATTTGAAGCAAGAACTCCAAATTGTCAAAATACTCAGCCCACATAAACCAAATTGACTTTAGCTGATTTCAGGAAAATACTTTGCTATTCTTTGCAGCTGAATAGTCCATAAACAAAAGAACTAATAAGAATCACTTCCAGGCAAGAGATGATAAGTTCAAAGGTGAGTGTAAACTCTTTCTAAGAATTATGATACACATAAAAAGGCATCCTAGATATTATATATTAATATCATGACTATATAAAATCATTTATTTCTATTATAGAAGTAACTTCATGATATAAGAGATACTGTGTTAGAAACAAATACAAGTACTTAATTCTTCAAGTAGTTAATCCTTCACTGATGGAAGTCAGCCACTAAATGTGATGTCTTTTGGGGAATATCTCTATGATAGACAGCTGAGTTCCCATGTAGGGGCTTTATAAACCATTTGTTAAACAAACAATTGGTAGTTAACATTTCCATGCCTAGAAATCATAAAGAAAATATTTAAATTTAGGAAAAAGTAAATTCTAAAATGAAGATACACTCTGTGTTGATGAGGATGCAAGGGACCCTTTATCTCTTTCCCATTAGACCAGCAATAAGGGCCTGTGCAACCGCTAGGTTGTCAATTATGTCTCAAAACTGGAAGAACTCCACATATTGACCTAAAGAGCCTGAAAGTCAGTCCAGACTCTCAGGAAAGCAAGATTAAGTGAAATCGTGCTGCACTTAACAATGAAGTAAAATTAATATAATGCAGTTATTATCTCTTACCTGGTTCTGACTACTTTTTTGCCTTAAGATGTGTGATGAGGGATGACAAAAGTGAAATTTTGATGTGGGAGATTCTTTAACCTAAAATATGTGTATCAGTTTCCATGGCATGAGCTTACAAATGCTTGGGACACTTTAACTTGAATTCTTTCATGATACATATGACAGTATCATAGTCATCCACTTCCCAAAACTGAGGTCTTCTGCTGTCTATTCTTGCAAGTCTTTGATCATATGTTAATCAACAGAAGTACTCAGAATTTAACCCTGAATCTCCTCTGTGTATTTAAAGCTTAACGAGTTGGAGTTTTTCTAACTGCATTAAAAACTTTTATTATTTTGTATTCTCTCAAGGTGACTGGTTACTTGAGTAACTTAGGAATAACTACCAGCATCTTGTAGTAAAAGAAAATTGTGTCCAACAAAAAAGTCAAACAAAGAAATGGAAGAGGTCCTTTTGAATTCTGTATTTGTCCCACTAGCTGTACCAAAAGTAGGTTAACCTTGTGATTTTTCAAGCCTGGCTTGAAAGGCATTTATACCAAGAGAATCCTTTTGAGACATCACAAATCTATTTTTTTTTAATTTTAAGTTGCTAGTAATATTCTCTGTTACCACAAAATATTTTAATAACTAAATAGTTTTTAAATTAAATTCGAGGAAACCACATAGGAAGTTTATGTGGTGGGAAAATTGACTAGACCCTATTCAGAAATTTTTTTTTTAGAACTCTTGCTGATTGTAGCAAATCCTAAAGCACAAGCCTGAGCCATCAATCAGACATACGGAATTAAGTTTGCATTTTTAGCATTTCACCCTGCCACTCAGCATGAAGTTTGTGTGTTCCGATTTCAAGAAATGCATGTAAATGAAACTATAAAATGATTAGCTCAATAATTTAGTAATTCTTTGATTGTAAAATAAAAATCTTCATTTGATATAATTTCGTAGTACATTCCTGTAGAGAACAGGGACCTTAAAATGCAATTCAATTGAAAAAGAAAAAAACAAGTCAACCATCTATTTTGAATACCTTTTGGGGAGAGCATCTCTAAGGGTGAGCCACATCCTGTTTCATTGACATTTCCACCAGACTGGACCAAGGAACATTTTTGCTCAAGGCTAATTGCAACGGTCTAGATCTATAAGGAAGGCTTTCCCGGATGACCTATATGTATTACAGTAAGTAAAGCTCCCCTCTGAGAAGCAGCTATTCAATAAACTTTTTTCCTTTAGAAGATGGGTTATTACAAGTCTATTGTCAGTGTGTCAACGATACTTTCCTCTTGATGAAAACCTTTATTTCTCTGGTGACAGTGAGTAACACCCTTTGTGATTTCAG
Seq C2 exon
GTTCTTGTCATTGTGGAAAGTGCATTTGTTCTGGAGAAGAGTGGTATATTTCAGGGGAGTTTTGTGACTGTGATGACAGAGACTGTGACAAACACGATGGTCTCATTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925:ENSMUST00000049681:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=40.0)
A:
NA
C2:
PF079748=EGF_2=PU(32.3=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types