GgaINT0120889 @ galGal3
Intron Retention
Gene
ENSGALG00000008461 | F1P302_CHICK
Description
NA
Coordinates
chr1:11494291-11496663:+
Coord C1 exon
chr1:11494291-11494393
Coord A exon
chr1:11494394-11496523
Coord C2 exon
chr1:11496524-11496663
Length
2130 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTATTTTTTTTCCCTATAGGCA
3' ss Score
11.49
Exon sequences
Seq C1 exon
ATTGTTATCGTGGCAATGGAAAGAGTTACATGGGGAATCTGTCCAAGACAAGATTTGGACTAACTTGCTCCACATGGGACAAGAATATTGAAGACTTACGTAG
Seq A exon
GTGAGTGCATGCAAAAGAGATTGTTCAGTGAGTCCTGAATAAATACTTCCTCCAGATGGCATCTCAGTTTCTTCTGCAGTGATTCTAAAATAGGCCCATATGCCCTGGAACTCTTTCCTTCCCCTTCCCCTTCCCCTTACCCTTACCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCTCCACTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCCCCTCCCCTCCCCTCCCCTCCTCTTTTTTTCCTTTCTTTTCATTTATTTCTTTTCCTGTCTCTTCATGTCTTTTCCTGTCTTTTGTCTTGACTTGTAGTGTCTTGTTAAAATATATTACACAACATGTCTTTGTTCAATCTAACCACTAATTGCAGGCTTTGAGATGTTTCTTAGTGTTTAGTTTACTGGTCGCGTTTTCCTCATTTGTCCTTGAAAGTTTGGTGGTTTTTTTTCTCTTCTATGAGAGAATAGCAGGAATAAAGCAGGAAATGGTTACGTTACATTTGCTCAATATTTATATTTACTTTTTGAAAGTTCTGAACACCATAAATTCCTGAGCAACTTGATCTGTTCTCTTAGCTCATACTCTTTGAAACAGGATGTTGGATTTGATACCTACTGAGGTCCCCTGCAAACTGAAATTAAATCATGAATCTAAAATTTAATGACAATGACATCAAATGCCATTAAAGCAGATTACAGTTTCTATTGTGTATTACTGCTTTAACTTCTGATTTCTAAGCAGTGGAAATAGCAAGATTATTTAACTTACTTGTTAAGGCAAGAATGATTCAGCAGAAATTACAAAAGACTTTCTCAGTCAACTCCAGGACCTTCAGTGTTGTCTCTGTTTGCTCAGAAGTGTAGATTAATAAATTTCAGGAGTAATAGGATCAATGTAAATCAGTAGGTGAACCTTCAGAGAAGCTGTGTTACAAAAAAACAGATTTCGGTGGCACTTTCTGGAATCACAGGCTGGATTATGTGTTATTTCCCCTACCCAGGGTCAGAGACAGGATATATATTCCAGCCTACTTTCTATCTAAAGCAGGAGATTTAAGATCAGGACTTCAGAGAGCTTAGATAAGTCTTCAGTTAGCTGTGAAGGATACAGCTTGAACCTTGTACTAACTGGATGCATAATACAGGTGCATTCATGAGTACAGATCAGCCTTTCTTCTCTTACTGCCACTAATTTTTCATCCAGGAAAGATTGGGAAATTACCTGTCTCACCTCAGCAATTACCCTGGTTTGGGGAATGTCAGAAGTAGTACACATGGTTGGTTATGAGCTCAGAGGGCAGCACAGCTGTAACTTAAGTAGCCTGTATGCTGCTGTCTGACAAACAAGAAATAAACAGCTTTCTCCACTTCAGATTGTCACCCTGGACTTTCACCTTTAGCTAAATGCTTTGTATAGGTCTGCTGCTTAGATCACCTATAACTGGAATTTGAGCCATTCAGTTCATCTTTCTCCTTGCCTGCTGCTTTGTCTGGTTAACTTCCTTGCATTTTTGCTTCCTTCACGTACAGTTTAGCTTTCTTCTGTGCAGAATCAGTGTTCTCTTCTGCTAACTGCTAACCTGCAGGGAGAAGATACCTAGGTTCCCAGGCAGATTTGCTGAATGCAGCATAGACGCTTTTCAAATCAGTTTAAAGATTTCTCCTGCCGGTATCCATGGATTTGAGTTTGAGTGTGAGATCTAGAAATCTCCCAGCTGTCCACTGGACTCAGTGCTTAAAATACTAACCCGAGGAAAGTTGGACCCAGATCCAGCAAATATTTCTCAGCTTCCCTTTGATTTTAACCACCTCTAAACCCTGAACTGCAGGCTCAATCAGCTAATATTACAGTGCAGAGCAAAGCAATATTTAACCTTTGAAAATCTCGGCTATGGCATAAAGTTTTTCAGCACTTTAATTTTTTATTTTTTTTCCCTATAG
Seq C2 exon
GCATATACAAATATTCAGAGAACCAGATGTTAGTAAACTGAAGAAAAACTACTGCCGCAATCCAGATGATGATTTTCATGGTCCCTGGTGTTACACAGATGATCCTCTCATTCCCTGGGATTACTGCCCTATTTCTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461:ENSGALT00000039793:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(40.7=94.3)
A:
NA
C2:
PF0005113=Kringle=FE(58.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]