HsaINT0075890 @ hg19
Intron Retention
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor (hepapoietin A; scatter factor) [Source:HGNC Symbol;Acc:4893]
Coordinates
chr7:81346548-81350163:-
Coord C1 exon
chr7:81350061-81350163
Coord A exon
chr7:81346682-81350060
Coord C2 exon
chr7:81346548-81346681
Length
3379 bp
Sequences
Splice sites
5' ss Seq
TCGGTGTGT
5' ss Score
5.93
3' ss Seq
AAGGCCTGTTGTTTCCACAGTCA
3' ss Score
6.83
Exon sequences
Seq C1 exon
ATTGTTATCGTGGGAATGGCAAAAATTATATGGGCAACTTATCCCAAACAAGATCTGGACTAACATGTTCAATGTGGGACAAGAACATGGAAGACTTACATCG
Seq A exon
GTGTGTAAATTTCTTCCTTTCAATATATAGAATGTAGTGATACCAACAGACTGTGTATTTAGATATGTACATTGCTATTTCTTTCTATTCTTTTATATATCATGGTAAGCTAATAAAAGCATTAGATTGGTTTTTCTTTACAACTCATCATAACATTGTTTCTTTATGTAGCAAACTTTTAAATATGCAATTCAAGTTAGTGGATATTTATTGAGCATTTACTATGTGTTCTGTACTGTAATTGGTACCATGGGGAACATCAACAAAAAGTGGATAATGTTTTGGTTCCAACCTCCAAGGAGGATACGGTCACATTGACACAATAGTTACATAACTTAATAAGACAGTGTATAAGTAAGTGGCAAATCTGGTGTTTGAAATATTGCATGTTATGGGATTATTGTTTTCATATTTAATAATTGATAGTTTATGAAAAATCAATGAATAATCACTCATATAATTTAAATTTCTAAAATACTAAACCTTAACTATTAAAAATGTGTAATGACAGGTTTCCTTATGTAGCTTTGATACATAAAATTTTCCAGTAATTACAGGAATGTATATGTAGTTGAAAAAATCTACAAATTTTAGAGAATTACAGATTTTTACCATAGATATACTCATAGAGAAGGTAGCACCCACTCAACCCTAGCAATAGTGCTAGTGTTTACAAAATTGCAAAAGAAGTATGACACATAATTGTGACCTAAAGCAGATTTTTTCATAAACATCCCAGAGTATATGCACTAGAATAAAAGAAAAAACAAGTTACAGTCATTTGATCAAGTGCCTATAACATGGCTGCTTTACATGAGTTATGCCATTTGACCATCATAATCCTATAGGAAAGATTCATATGTGGATAGGAATTTAAGGGCTCAGAGAGATGGAGTGACTTTGCTTCAGTCTTTTAACTTTAAGTTCCTTATTCTCTTCCAAAATGTACTCAATAGTGGATTATATTGTTTCAGTTAATTTACTTCACACAAAAGGATAGTTCTAAAATAATGCTCTCCAATATAAAGACAATGCAGCTCACAAATGTAAGCGACATATGTTCTGTTAAATTCCTAGTAGCCACTTTTAAAGAGGTAAAAATAAACAGGCAAAATTAATTTTAATATATTTTATTTAATCCACTGTATCTACAGTTTTTCATTTCAATATGTATTTAATACAAAATAATTAAAAATATCTTTTACATTATATTCTCATGCTCCATATTCAAAATCTGGTGTCTGTTTACACTTACAGCGCCTGTCAATTTGGACTGAATCAATTTCTCAGTAGCCATATGTGGCCAGTGGCTACTATATTGACACTGGAGTTCTAGGACTTCAAAGAGCAGCAGACTTCTGTCCTTATAGATCTCCCACTCTAGTGTGGGATGCAAGCAAACAGGGAATGCCATATGAAAACTATGAAAGATAGCATATTTTATGCTATGGGAATGCAAAGAAGTGCCTACTCAGACGTAAGTGGTCAGGAAGGCTTCTTAAAGGAAGGGAAATTAGCTGGGATGTACATGATGAGTAGGAACTGGGCAAGGGAAGTAGAGGAGGAAGAGGACATTAGACACAAGAAATTGCATGTGCAAAGGCCAAAGCATTAGATTATTTGAATATAGGAAATAATTTTGGTAAGACTGAAAGAATGTAACTTGGTCAATGTCCACAGAGAAGGAATTCACAAAGTGGTAACACCATATAGAGAGTCTTGTAAGCTCAGTTAAGAAATCTAAATTTTATCCTGAGGATTAAAAGGATTTATTAAATAATTTTAAGTAAGAATTGGCATGATTAAAATAAATGCTAATTTCAGCACTGCTATTTTTTAAAGCATTTTTAGAAACATGCAGTGGTGGGTGGGGTGGATTGCTCTTATGGACTTGTGAGAGAGAATTGTTCTCATCGTCTTTCAAAAGTGTTGCCTTCAGTGATTTTACACTAGAAGGTTGAAATTTTCATGGTAGAAGTATTTACACTACAGAAATCAGCAACAACTTCAGACGAGGATTCCTCATCTTCATCCTCACCGTACACATACCTCAAAGTACCAGTTGGTAAACTTTTACCAGCATACCACTGAAAATATGTGATATATTTATTTAGAAACTATCAATGGGTCTCTAATAATACTTAATTCATCAAGTTTAGGTTTGACTTTTGGAAACAATTTGTAGGAAATTGATCAAGGATTAAGTCACATGGTACCATTTTGGCTTAAGGACAAACTTTGTAAGTAGGAGACAGAGCATGGCGGTTTTGAGCACTGACTCTTGAAATAGCCATGGGTTCAAACCCCAGCTCTAGTGTTTGCAAGTCATGTGACATTACACCAATTAGTTTTCCTCTCTGGATTTCAATTTCCACAAATGTAATATGGCATAACCTTAAAGACTATCTCATAAGATTGGTCTAAGGTTATATCTACAAAGAACCTACAACACAATGTGGCATGTAATAAGTACTATATGTGTTTACTGTTATTCTTGGTCCAGAAAAATGAAACTTGGTCTGGAAATATAGTCCAAGTTTCCATGTTCAAGCTTTTTAAAATTTTATTTAAAATGACACATTAATTATATTCAAGCATGGTAGCAATTAATAACTGGAAACAAGTTCAGTAAGATGAATAGTTTTAATGACTTTTATGATCAGTCAAAGTGGCCATGTAGAATTGACTTCATTCATGTTATTGAGGTAAATGTAAATATTGATGTTACATGAATGAAAATGGCCTTATAAAATAATTTACAGTAAATTTACAATCTTTGCTTTTCTTTTGTAATAAATTTAGTTAAGATGTGAATTAGAAATAAAGTATTGCTCGGTTATCTGTCAAAATAATATTTTGTAACTGATCAGTAAAATTTAGAATTTTAATTATTTAATTAACACATTATTCATTTCAGTATATCTTCTTGTACTCTGTCATAGTGATATGGCTAGTGATGCTTCATTTGTATCTAAAATGTAAAAAAATACTTGTATAATAGCTTGTATTTTTTATGTATTTTATAGTTTTAATCTTTGCCATCTGCTTGCTTTAGACAATGTTTTTCTTATTTCTATGCACAGAAGTATCATTACCATGCCACTGGGATTACCAAATAGAGGCAAAATCACAAAACCTAATATGCCAATTATGGAGCCCTCTTCCATATTTCCAAGTTAGAGAATCTGCTTCTAAAGTGTAGGAACAACAGTAGCAACCAAACAGACCTCAAACAAAATAGCTAAAATTCATCCCAAGTAAAAGGTTATGCTGTATCTACAGTGAAAGTAATGTGCTGAGATTATATCTTTTTGTAATATTTTGTGTCTCTTGGATGGAATGAGCATCTTGTGATGTGCAAGGCCTGTTGTTTCCACAG
Seq C2 exon
TCATATCTTCTGGGAACCAGATGCAAGTAAGCTGAATGAGAATTACTGCCGAAATCCAGATGATGATGCTCATGGACCCTGGTGCTACACGGGAAATCCACTCATTCCTTGGGATTATTGCCCTATTTCTCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-HGF:NM_000601:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=94.3)
A:
NA
C2:
PF0005113=Kringle=FE(57.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)