GgaINT0121135 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79206007-79206971:+
Coord C1 exon
chr1:79206007-79206221
Coord A exon
chr1:79206222-79206755
Coord C2 exon
chr1:79206756-79206971
Length
534 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
AATTGTTTCTTTCTTTTCAGGAT
3' ss Score
11.61
Exon sequences
Seq C1 exon
GTGGGCAGATCCATTGGAGTCAGACCCCATCCAAGGCACACAGCACTAGCCTTTGGTCACAGCCACTGTCTGTGGATGTGGAGTTAACAGCTTATGTCCTCCTGGCCCTGCTCTCCAAGCCAAATGTCACAGAGGCTGACTTCACCATAGCCTCTGGCATTGTGGCGTGGCTCACCAGACAGCAAAATGCCTATGGAGGATTTGCCTCAACCCAG
Seq A exon
GTAACTCAGGGCTGGGGAAGGTAACAGTGCCTGAGAAAGATCTCTGCCTCTGAAAGGTGCTTACAGTGAGAGCGGAGTTGGTCTCTTCTCACCGGTGACAGGTGACAGGACAAAGGGAAGTGGCCTTAAGTTGCACCAGGGAAAGTTTAGGATGGATATCAGGAAAAACTTCTTTACAGAAAGGGTTGTTAAGCACTGGAATAGGCTTTCCAGGGAGGTGGTTGAGTCACCATGCCTGGATTTGTTTAAAAACCATTTGGATGTGGTGCTCAGGGACATGATTTAGTGGAGGATTGTTAGAGTTAGGGTAGTATGGTTAGGTTGTGGTTGGACTTGATGATCTTTAAGGTCTTTTCCAACCTGAGCGATTCTATGATTCTATGATCTATGCAAGTGTGAAAAAAAAACACAGTGTGAACACTTTGAGGAGAAGAACCCATGTATACAAAGGTTCTCAGGATGGTGAGTTCAAGTGTCTTTGGTCCTCAGAGCTGTGGAGCAAATGTGTAAATTTAATTGTTTCTTTCTTTTCAG
Seq C2 exon
GATACGGTAGTTGCCCTGCAGGCCTTGGCTAAGTATGCAGCGCTGACACACAACACAAAAGGGGTTGCAGAAGTGAGAGTGAGGTCCCAGAGAGGCTCTGGGAGGAAGTTCCAAGTTTCCTACCACAATCGGCTTTTGGTGCAGGAGATGGCACTGAGAGAAATCCCAGGAAAGTTCTCAGTGCAGGCCCATGGCAGCTGTTGTGTCTTTACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(15.4=52.1)
A:
NA
C2:
PF076789=A2M_comp=PD(5.3=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCAGACCCCATCCAAG
R:
CTGCACCAAAAGCCGATTGTG
Band lengths:
345-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]