GgaINT0121141 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79208940-79209592:+
Coord C1 exon
chr1:79208940-79208981
Coord A exon
chr1:79208982-79209320
Coord C2 exon
chr1:79209321-79209592
Length
339 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTTTACTCTCATTTCTCCAGGGA
3' ss Score
10.44
Exon sequences
Seq C1 exon
AGGAGCAGGCCCTTGCTGATTATAATGTTTCCTGCATCTGAG
Seq A exon
GTAGGTGTGTACCCCACAAAGATTTTTTACTCTTCCCTTCCTCAACCACTATACAGATCTAGTAGCCTCATTATGTTTCTTCTCTTGCTGCCTGAGAAGAGCCTTGCAAACCCCTGATTCAGCATGTTCCCTTTATTTGGGACCATGACGATCAAGTCCAACTCCTGTCACTGCTGAATGTCCCACCTTTTTCTGTGAAAAGGCTGAATTAAGGGAACTTAATTAAACCAGAGAAACACTGTCCTTAGTGAAAATCCGGTCTCCATAGCTGCTAGCATTCCAGTTGGTTATACTATTTTCTCTCTGATATGATCCCTCTTTTTACTCTCATTTCTCCAG
Seq C2 exon
GGACATGGCCTGCTCTCTTATTGTCCACTGTTCCGACCCACAGGAGTTCTACTAGTGGGACATGCCCTAGGATGGAAATCACAGTTTGATATTGGTGCTGGGGAAGATCTCAAATTGCATTTCAGGACTAAACCCAGCCCATGCCATGCTGCTCACCTTGACAGTCATTTTTGGGTGTATTCTTTTGGGTGTCTGATTAATTCTGATCGTTATAATCCAGGGATTTTCTTGCTTGTAAAAAGAAGGAAAATAAAATATAAATCATAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.9=50.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGCCCTTGCTGATTAT
R:
CCTTCTTTTTACAAGCAAGAAAATCC
Band lengths:
286-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]