MmuINT0102598 @ mm10
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121888563-121889057:+
Coord C1 exon
chr6:121888563-121888604
Coord A exon
chr6:121888605-121888912
Coord C2 exon
chr6:121888913-121889057
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTTCTATCCCCATACACAGACA
3' ss Score
6.83
Exon sequences
Seq C1 exon
ATGAAATGGCTTTTGCTGAATACAGCAGCCCCTGCAGCACAG
Seq A exon
GTGAGTACCCAGCACTCCTACCCCAAGCCTTTCTCTGACTTCCTTCCCCTCAACATTATCCTGAAATTTGTTAGATGATCTCAGACAATTCTCAGGAAATGTAGAAATGTGCACATTTGGATTGGCATTCCAGCCCCTGAGGACTCCTCCAACTTCTTTACCAAAGTGTATGGTAGCTTATAGTAGAAAATCTGAAGGACACCATTCTCCATCACTGCCAGTTTGCTTTTCTGCAGAGACCCCTGCTATCTGTGCCCAGGTAGATTATACTCATCATATGTGTTGTTTTCTTCTATCCCCATACACAG
Seq C2 exon
ACAAACAAAATGTTTGAAACTCCTATTTGTAGACAAGGCATTGCTGGAATCCCCAGACCCAGGAACCTTCAAGATGGTGATTTGTGTTTGTCTCTGAAATACAACTACTGAACAAGCTTGATAAATAAATGCCTAGTCCTCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908:ENSMUST00000032228:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=46.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGGCTTTTGCTGAATACA
R:
TCTCGAGGACTAGGCATTTATTT
Band lengths:
186-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types