GgaINT0121433 @ galGal3
Intron Retention
Gene
ENSGALG00000011558 | LRP6
Description
NA
Coordinates
chr1:73976763-73978344:-
Coord C1 exon
chr1:73978114-73978344
Coord A exon
chr1:73976900-73978113
Coord C2 exon
chr1:73976763-73976899
Length
1214 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATACGTTTGCTCTTCTTTAGGGA
3' ss Score
9.2
Exon sequences
Seq C1 exon
ACACGACAGAGGAGCCTGCGCCACAGCCCAACAACACAATAGGCTCCATCATTGGTGTAATCCTCACACTTTTTGTGGTCGGAGCAATGTATTTCATCTGCCAGAGGGTGCTGTGCCCACGCATGAAAGGAGATGGAGAGACAATGACCAATGATTATGTGGTACATGGACCAGCCTCTGTACCTCTTGGTTATGTGCCTCACCCAAGCTCTTTGTCGGGGTCTCTTCCTG
Seq A exon
GTGAGTAAACAGCGTGTTCCTTGTTTTGCTCTTTGGCCTCACATAGTTAGAGCTGAGGATACTGTTCATGTATGCACAGGAGACATTGGTTCCAGAAGCATAATTCTTCACGTCTCTAAGAGACAGGACAGTTGAGGATTGTTGCTGTCTATTGCAATAAATTTCTATTTTTTCCATGCCACACACAAGCATTCAGATTCTTAGCAGAACCATAAGTTCAAATAAGTATATCATGGGAATTCTCTTTTTTGCTGCAAAAGAAGCCTCTTTTTACGGAATTATAGCACTGGCAAGGTGTCATGACAGATCATGGTAAAGTTACATGGAGATATATTCGTAAGACTTTGTTTAAAGATTGTATAATTATTAGATTTGTAGACTAGATCTTTATACTTATGAAACTTCTTGTAAAGTCAGAAATGACCATAATAACTGGTTTCAACTTATTTCATTATTTGATAATGAAGTTTCTGATACCAATTCACATGCGTGATGTTACTGCTGATTAAAAAATGAGGTTTGCCTGCAACATTACACTTCATATGTATGCATTTCTTTTGTATGTATTGATTAAATATGAACTGTAACTTGTGGCTCTGGATCCAGTGGGTTGCAGTTAGGACATATGTGTTTTTGAGGCTAGTACAGGGTTACAAAAATTCACCAAATTTCTTTACTTTCTGTAGTAACCTGCTTTAATGGTAGAGTCTTTAAGAAGAATTTGCATTATTTCAAGCACAATTGCATACCTGTCTGTTTACCGCTTGGACTCTCTGCCAGCATGATTCAGTCCAGCAGCAAAATCTTACTTACCTGTGTATAAATGAAAGAACAAACCCTCTCTTCTCCTGCACGAATTTCAGTTGCTCGGTTGTCGTGGTTGGAGTTAGTTTCGTGTTTTATTCCAAGACATAGAAATAATGCCTGAATGCCTGTTCTCTCAAGTCTTTTACAGCTGTTCAAGTGAAAGGAATCTGGTTCTCTTCATGCAGCTTTAGTGCAGCTGAGTGCCAGATCCTGCAGTTCAGTTTATCCCCTGACAGTCTTCATTCTATTTCTCAGTCGAGAATTTGCTCTTAATACTGAAAAGATTAGTTTTGCTTTTAGGAGTTGCACTGATACCGCTGTTATCCTCACAGCTTTTTTTCTGTAATCTTTCTTTTCTCTATTTGCCTTGAAGAACTGAATATTGACATACGTTTGCTCTTCTTTAG
Seq C2 exon
GGATGTCTCGAGGAAAATCTGTGATCAGCTCCCTCAGCATTATGGGAGGGAGCAGTGGGCCACCCTATGACAGGGCCCATGTCACTGGAGCATCTTCCAGTAGTTCTTCAAGTACGAAAGGCACTTACTTTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011558:ENSGALT00000018841:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.543
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAACAACACAATAGGCT
R:
GGAGGAAAGTAAGTGCCTTTCGT
Band lengths:
343-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]