BtaINT0087036 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98164289-98166143:+
Coord C1 exon
chr5:98164289-98164519
Coord A exon
chr5:98164520-98166006
Coord C2 exon
chr5:98166007-98166143
Length
1487 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTATTTACCCCTCATTTTAGGAA
3' ss Score
9.76
Exon sequences
Seq C1 exon
ATCCAACTGAGGAGCCAGCACCACAGGCCACCAATACAGTGGGTTCTGTTATTGGAGTAATTGTTACCATCTTTGTGTCTGGAACCATATACTTTATCTGCCAGAGGATGTTGTGTCCACGGATGAAGGGCGATGGGGAAACCATGACTAACGACTATGTAGTTCATGGACCAGCTTCTGTGCCCCTTGGTTACGTGCCACACCCCAGTTCTTTGTCAGGATCTCTTCCAG
Seq A exon
GTGAGCCAGGACTGACCCATTGAGAATCAAGTCTTGGCAAGATTGCCAAGCTTCCATTATGGAAACAGAATACTGCCTACAGTCTACTTCAATGTAGACTATTTTGGGTTTAAACAGAAGGACAAATGTTCGCTTACTTTTAGCACCTTCTTTTTACACAGAAGACCTTAGGTATGGTTTGTTAGAAATTGGCAAAGGATACAAAGCAAATACATGTACATACAAGCATTTATATTAATATACATTTATTGCATGTACACTTCATTTCTGGGCTTCCCAGGTGGTGCTGGTGGTAAAGAACCTGCCTGCCAATGCAGGAGATACGGGTTCGATCCCTGGGTCGGGACAATCTAGAGGAGAGCATGGCAATGCACGCCAGTATTCTTGCTTGGAAAATTCCATGGACAAAGGAACCTGGTGGGCTACAGTCCGTGGGGTCACAAAGAGACTGAAGTGACTTAGCACGCATGCACTCTGCATTTCTAGATGTGCTGTACTAAAGTTAATCAACTGGCCATTTGTTGAAAAGAATCATAAACCACAGTTCATTTGGTTCACTACCAAGAGACCTGTACTACGGAGCCCAGGAATTAGAGGAGCCCGAAAAAACAGATGAGGTTTCCTTTTCAGCAGATTTAGAAATGCCTGATTGATAGCAGGGAGGAATACATCATCTTATGTTTTCTCCTAACTTAGATGAAGACAATGGGAGGAGGGTTTATTCAAGCATGGCCAGGGTGCCAGATGTTCTGTCCTTGGGGAAGACTGCATTCCTCTAGGGAAGTACAGCTTTCTTTTCAATGTCTTTTGGTACCCTTAATGAAAAGAAGCCTTTCTTGTAATGAATATGGAGAAAGAGATACCAGGCCAAAAACCCTGTGAAAATAACTTACTCTGGTTGTTAGCTGTAAGGAAATAGATGGTTTTTAAATTGTTAATAGATTCCCTGTTGCCATACCTAGTTTGTTAAAGGTGGAATTTGGGAAGTCACTTGTGAAAAATAGAATTTCTTCTTTAGCATTGTGGTTGTGATTACAACAACATTTGCATCTAGTAGATAAATAATTTCCCATACATTGAATTTATGCTCTTAACAATGGGTTTACTTTTCTTTTGAGCAGACCTATTGCTTTGTCTAGCCTGCTTTGCACTTCTGCTCTTCACAGTTCTTTTTTTCTCAGGTCTTCTAAGAGACTGAAAACCTCTCATCTTGAGGAGCTCTGCTTCCACTCTGGCGAGTAGGAAGAGCCAGGAGCTATCCTTGGCCTTGTGTTATAGGCCAGCTCTCAATGGAAGTCCCCACTTCTAGAGAACATTTGTTTGCCTTTTCCATTAAGTATTTTCAATTATTATTGGGAAAAGAGGGCATACGTTGTTTGAAAATGGAGCTATTTGACTATTGATATTTGCAATTCTAGGACTAAATAAAATGATTTCATGCCTTCTTATAGATTGAACTCAACTTCAGTATTTACCCCTCATTTTAG
Seq C2 exon
GAATGTCTCGTGGTAAATCAATGATCAGTTCCCTCAGTATCATGGGGGGGAGCAGTGGACCCCCTTATGACCGAGCCCATGTCACAGGAGCATCGTCAAGTAGTTCATCAAGCACCAAAGGCACTTACTTCCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761:ENSBTAT00000061164:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGGCCACCAATACAGTG
R:
TGCAGGGAAGTAAGTGCCTTTG
Band lengths:
348-1835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]