GgaINT1016986 @ galGal4
Intron Retention
Gene
ENSGALG00000011558 | LRP6
Description
low density lipoprotein receptor-related protein 6 [Source:HGNC Symbol;Acc:HGNC:6698]
Coordinates
chr1:71838506-71840087:-
Coord C1 exon
chr1:71839857-71840087
Coord A exon
chr1:71838643-71839856
Coord C2 exon
chr1:71838506-71838642
Length
1214 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATACGTTTGCTCTTCTTTAGGGA
3' ss Score
9.2
Exon sequences
Seq C1 exon
ACACGACAGAGGAGCCTGCGCCACAGCCCAACAACACAATAGGCTCCATCATTGGTGTAATCCTCACACTTTTTGTGGTCGGAGCAATGTATTTCATCTGCCAGAGGGTGCTGTGCCCACGCATGAAAGGAGATGGAGAGACAATGACCAATGATTATGTGGTACATGGACCAGCCTCTGTACCTCTTGGTTATGTGCCTCACCCAAGCTCTTTGTCAGGGTCTCTTCCTG
Seq A exon
GTGAGTAAACAGCGTGTTCCTTGTTTTGCTCTTTGGCCTCACATAGTTAGAGCTGAGGATACTGTTCATGTATGCACAGGAGACATTGGTTCCAGAAGCATAATTCTTCACGTCTCTAAGAGACAGGACAGTTGAGGATTGTTGCTGTCTATTGCAATAAATTTCTATTTTTTCCATGCCACACACAAGCATTCAGACTCTTAGCAGAACCATAAGTTCAAATAAGTATATCATGGGAATTCTCTTTTTTGCTGCAAAAGAAGCCTCTTTTTACGGAATTATAGCACTGGCAAGGTGTCATGACAGATCATGGTAAAGTTACATGGAGATATATTCGTAAGACTTTGTTTAAAGATTGTATAATTATTAGATTTGTAGACTAGATCTTTATACTTATGAAACTTCTTGTAAAGTCAGAAATGACCATAATAACTGGTTTCAACTTATTTCATTATTTGATAATGAAGTTTCTGATACCAATTCACATGCGTGATGTTACTGCTGATTAAAAAATGAGGTTTGCCTGCAACATTACACTTCATATGTATGCATTTCTTTTGTATGTATTGATTAAATATGAACTGTAACTTGTGGCTCTGGATCCAGTGGGTTGCAGTTAGGACATATGTGTTTTTGAGGCTAGTACAGGGTTACAAAAATTCACCAAATTTCTTTACTTTCTGTAGTAACCTGCTTTAATGGTAGAGTCTTTAAGAAGAATTTGCATTATTTCAAGCACAATTGCATACCTGTCTGTTTACCGCTTGGACTCTCTGCCAGCATGATTCAGTCCAGCAGCAAAATCTTACTTACCTGTGTATAAATGAAAGAACAAACCCTCTCTTCTCCTGCACGAATTTCAGTTGCTCGGTTGTCGTGGTTGGAGTTAGTTTCGTGTTTTATTCCAAGACATAGAAATAATGCCTGAATGCCTGTTCTCTCAAGTCTTTTACAGCTGTTCAAGTGAAAGGAATCTGGTTCTCTTCATGCAGCTTTAGTGCAGCTGAGTGCCAGATCCTGCAGTTCAGTTTATCCCCTGACAGTCTTCATTCTATTTCTCAGTCGAGAATTTGCTCTTAATACTGAAAAGATTAGTTTTGCTTTTAGGAGTTGCACTGATACCGCTGTTATCCTCACAGCTTTTTTTCTGTAATCTTTCTTTTCTCTATTTGCCTTGAAGAACTGAATATTGACATACGTTTGCTCTTCTTTAG
Seq C2 exon
GGATGTCTCGAGGAAAATCTGTGATCAGCTCCCTCAGCATTATGGGAGGGAGCAGTGGGCCACCCTATGACAGGGCCCATGTCACTGGAGCATCTTCCAGTAGTTCTTCAAGTACGAAAGGCACTTACTTTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011558:ENSGALT00000018841:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.543
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAACAACACAATAGGCT
R:
GGAGGAAAGTAAGTGCCTTTCGT
Band lengths:
343-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]