GgaINT0123162 @ galGal3
Intron Retention
Gene
ENSGALG00000006706 | LOC419104
Description
NA
Coordinates
chr1:6163434-6163682:-
Coord C1 exon
chr1:6163617-6163682
Coord A exon
chr1:6163534-6163616
Coord C2 exon
chr1:6163434-6163533
Length
83 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TCTTGATTCTTTCATTGCAGACT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GACTCTCAAGAGATGTCCACTAGCTTTTACACCACAAAATGGTTTTTCCAGTGTTTCCTTGATCGC
Seq A exon
GTGAGTATGTTTTCCATATTCTTTCTCTGTTTTTAATTGTGGGTTTGAACAGACTGTCTTCACTCTTGATTCTTTCATTGCAG
Seq C2 exon
ACTCCCTTTATGTTAAGCCTCAGGATATGGGATATCTACATACTTGAAGGAGAGCGGGTTCTCACTGCTATGTCGTACACAATTCTGAAGATACACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706:ENSGALT00000010845:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAAGAGATGTCCACTAGCT
R:
GTGTATCTTCAGAATTGTGTACGACA
Band lengths:
161-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]