RnoINT0162010 @ rn6
Intron Retention
Gene
ENSRNOG00000017644 | Usp6nl
Description
USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]
Coordinates
chr17:75777841-75778097:-
Coord C1 exon
chr17:75778032-75778097
Coord A exon
chr17:75777941-75778031
Coord C2 exon
chr17:75777841-75777940
Length
91 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
CTGCTTTGTCTGTCCTGCAGACT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GATTCTCAAGAAATCTATACAAGTTTTTACACAATGAAGTGGTTTTTTCAGTGTTTCCTTGACCGA
Seq A exon
GTAAGTACTGTTGTAAACCTCAGTTATGAGAGCACCAGCCCACGTGAGAGGAAGCACCGATTCACACCGCCCTGCTTTGTCTGTCCTGCAG
Seq C2 exon
ACTCCCTTCAGGCTGAACCTCCGGATCTGGGACATCTACATCTTTGAGGGAGAGCGAATTCTCACTGCTATGTCTTATACAATCTTGAAGCTACACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017644:ENSRNOT00000046266:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTTTTACACAATGAAGTGGT
R:
GTGTAGCTTCAAGATTGTATAAGACA
Band lengths:
144-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]