GgaINT0123426 @ galGal3
Intron Retention
Gene
ENSGALG00000000141 | E2JF30_CHICK
Description
NA
Coordinates
chr16:70868-71095:+
Coord C1 exon
chr16:70868-70978
Coord A exon
chr16:70979-71071
Coord C2 exon
chr16:71072-71095
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCGTCTCGCTGTGTTTCAGGGC
3' ss Score
10.02
Exon sequences
Seq C1 exon
AGCCGCCGGCGGACGCGGGCAGGAGCAAGCTGCTGACGGGCGTGGGGGGCTTCGTGCTGGGGCTCGTCTTCCTGGCGCTGGGGCTCTTCGTGTTCCTGCGCGGTCAGAAAG
Seq A exon
GTGAGCGCTGGGGAGGGGGGCTGCGCCGGGGGGGGGTCGGGAGCGGGGGGTGGGGGGCAGCGTCCGCGCTGACCTCGTCTCGCTGTGTTTCAG
Seq C2 exon
GGCGCCCCGTCGCCGCCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000141:ENSGALT00000000194:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]