RnoINT0122885 @ rn6
Intron Retention
Gene
ENSRNOG00000032708 | RT1-Bb
Description
RT1 class II, locus Bb [Source:RGD Symbol;Acc:3469]
Coordinates
chr20:4047631-4048101:+
Coord C1 exon
chr20:4047631-4047741
Coord A exon
chr20:4047742-4048077
Coord C2 exon
chr20:4048078-4048101
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TATGTGACTTCCCTTTGCAGGAC
3' ss Score
12.1
Exon sequences
Seq C1 exon
GGGCACAGTCCGAGTCTGCCCAGAGCAAGATGCTGAGCGGCATCGGGGGCTTTGTGCTGGGGGTGATCTTCCTCGGGCTTGGCCTTTTCATCCGTCACAAGCGTCAGAAAG
Seq A exon
GTGAGGAGCTCTGGGAGACTGGGAGTGGTGGGCTCTGCTGTAGGGGGGAGCTGGGCTGCGGGTGGGAGGACCTGGAGCTCATTTTGTGACCTCTGAACCTGTCCACCATTCTCGCTGGCTCCTTTCTGGAAGCTTCTGGCAATGAGGAAGCGTGGGTCTTGCCTTCCCTCCTTCCTGTGGCAGTTTCATCCACTTGGGGGCTGGCTCAGGGCCTTAGTGAACACAGTCGGTGAGAGGACAGCTCCACCAAGCTGCAGGACCCACCACCCCTCATGGGCTGTGTGAGAGCCCCTGTGTTTGTAACAACACCTTTCTCTATGTGACTTCCCTTTGCAG
Seq C2 exon
GACCTCGGGGGCCTCCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032708:ENSRNOT00000000525:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]