GgaINT0123443 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16:290614-291075:+
Coord C1 exon
chr16:290614-290886
Coord A exon
chr16:290887-290969
Coord C2 exon
chr16:290970-291075
Length
83 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
ACAACACTGCTCTCCCCCAGAGC
3' ss Score
7.91
Exon sequences
Seq C1 exon
TGCAGCCCGAGGTGCGAGTGTGGGGGAAGGAGGCCGACGGGATCCTGACTTTGTCCTGCCACGCTCACGGCTTCTACCCGCGGCCCATCGCCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACCCGCTGGGGGGGCATCGTGCCCAACGGCGATGGCACCTACCACACCTCGGCTGCCATTGATGTGCTGCCGGAGGATGGGGACAAGTACCGGTGCCGCGTGGAGCACGCCAGCCTGCCCCAGCCCAGCCTCTTCTTGTGGG
Seq A exon
GTGAGCCTGGCAGCGTGTGGTGTGTGGGGTTTGGGGGTTTGGGGGCCACTCCTTCCTTTCCTGACAACACTGCTCTCCCCCAG
Seq C2 exon
AGCCACAGCCCAACCTTATCCCCATTGTGGCCGGAGCGGTCGTCGCCATTGTGGCTGTCATCGCTGTTGTCGTTGGATTGGTGGTGTGGAAGAGCAAGTCAGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017674:ENSGALT00000028378:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGATGTGCTGCCGGAG
R:
CACACCACCAATCCAACGACA
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]