MmuINT0075631 @ mm9
Intron Retention
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35610028-35610534:+
Coord C1 exon
chr17:35610028-35610303
Coord A exon
chr17:35610304-35610430
Coord C2 exon
chr17:35610431-35610534
Length
127 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CCTGTACCTGTCCTTCCCAGAAC
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATCCCCCAAAGACACATGTGACCCATCACCCAGGATCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAACTGGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
Seq A exon
GTAAGGAGAGTGTGGGTGCAGAGCTGTGGTCAGGGAAAGCTGGAGCCTTCTACAGACCCTGAGTTGGTCAGGGCTGAGAGCTGGGGTCATGACCCTCACCTTCTTTTCCTGTACCTGTCCTTCCCAG
Seq C2 exon
AACCTCCTCCTTCCACTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGATGAAGAGAAGGAGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235-H2-Q10:NM_010391:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=90.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCCTGCTGACATCACCC
R:
GCCACAGCAGATCAGCAATGT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: