GgaINT0123724 @ galGal3
Intron Retention
Gene
ENSGALG00000001964 | INPP5E
Description
NA
Coordinates
chr17:8568963-8569784:+
Coord C1 exon
chr17:8568963-8569124
Coord A exon
chr17:8569125-8569668
Coord C2 exon
chr17:8569669-8569784
Length
544 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTTTTCCCCCTCCCATACAGGGT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GTGATGTCACAACTCGCTTTGATGAAGTATTCTGGTTTGGTGACTTCAACTTCCGACTAAATAAGGACCGCGAAACTGTGGATTCCATCTTGAACCAAAATCCAGAAACAGGAGTCTCCAAACTACTGGCATATGACCAGCTTACCAGTGAAATGGGGAGAG
Seq A exon
GTAAGTAACAGCTGTCCTCCCAGCCTGCAGGTTTCTACACACAGAAATGATTGCTGCCAACTCCCTATTTTCTAAACATATTCACTGCTTTCTCTTGTTAAAATCACTAGAAAGGGAACTCAGCAGTTGTCGAATCTGGTGGGAGTCTGTTAAGGAGAATTCTGCCTTTTGCTGTGCATCTCGTGTAATCTGCCAAGCTATTTATTGTTCTGTTTCATCTGACTCCTCTGTAAAATGGTCGTCATTCTCTCACAGCACCAAGGGCATTTAGGTTGTACAGACAGCACACCAAAGCATTGTGAGCTCCCTGTGGAAGGGGAAGCACATACACCAAGTGTTGTTTGTTTAAGTAGGCACAGACTAGCTATTCATCTTCATCATGTAAGAGCCTGAACTTCCTACATTTCCAGAGCCTAGTCTTCCATAGTCATGTATGTACACGCTTGCTGTTCCTACCCAGCATTAGTTCAACAGTGTTGAATAAGTGCAGAATGTGTGCCAGAGTGATGGAAGGAGTTTATGTTGTTTTCCCCCTCCCATACAG
Seq C2 exon
GGTCTATTTTCAAAGGATTCCAAGAGGCTGACATTCATTTCCGTCCTTCCTACAAGTTTGACATAGGAAAGGACAGCTATGACACCACTTCCAAACAGAGGACTCCTTCCTACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964:ENSGALT00000003045:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(19.2=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCACAACTCGCTTTGA
R:
GGAAGGAGTCCTCTGTTTGGA
Band lengths:
272-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]