RnoINT0074713 @ rn6
Intron Retention
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3845370-3845712:-
Coord C1 exon
chr3:3845551-3845712
Coord A exon
chr3:3845486-3845550
Coord C2 exon
chr3:3845370-3845485
Length
65 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGAACTCTCCTGTGTTGCAGGGT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGGATGTCACTACCCGGTTTGATGAGGTCTTCTGGTTTGGGGACTTCAACTTCCGCCTAAGTGGTGGACGAGTGGCTGTGGAGGCCTTCCTGAAGCAGGACCCAGAGGTGGATGTGCTGGCACTCCTGCAACATGACCAGCTCACCCGGGAGATGAAGAAAG
Seq A exon
GTAAGTGGCCTGGGGAGCAGCACCTCAGACATGGCCGGCCCTCTCTGAACTCTCCTGTGTTGCAG
Seq C2 exon
GGTCCATCTTCAAGGGCTTTGAGGAGGCAGAAATTCACTTTCTCCCATCCTACAAGTTTGACATTGGGAAGGACACCTACGACAGCACCTCCAAGCAAAGGACACCCTCCTACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039:ENSRNOT00000025764:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(19.2=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCTTCTGGTTTGGGGA
R:
GCCTCCTCAAAGCCCTTGAAG
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]