RnoEX0044223 @ rn6
Exon Skipping
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3845370-3846316:-
Coord C1 exon
chr3:3846209-3846316
Coord A exon
chr3:3845551-3845712
Coord C2 exon
chr3:3845370-3845485
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATTCTCCCACATGTGCCCAGGGG
3' ss Score
5.61
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGGAGATGGGAAGGTAGCAGAGCGGCTACTGGACTACAACAGAACCATCCAAGCCCTCGCCTTGCCCCGGAATGTGCCAGACACAAACCCCTACCGCTCTAGTGCAG
Seq A exon
GGGATGTCACTACCCGGTTTGATGAGGTCTTCTGGTTTGGGGACTTCAACTTCCGCCTAAGTGGTGGACGAGTGGCTGTGGAGGCCTTCCTGAAGCAGGACCCAGAGGTGGATGTGCTGGCACTCCTGCAACATGACCAGCTCACCCGGGAGATGAAGAAAG
Seq C2 exon
GGTCCATCTTCAAGGGCTTTGAGGAGGCAGAAATTCACTTTCTCCCATCCTACAAGTTTGACATTGGGAAGGACACCTACGACAGCACCTCCAAGCAAAGGACACCCTCCTACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(12.8=100)
A:
PF0337218=Exo_endo_phos=FE(19.2=100)
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATGGGAAGGTAGCAGA
R:
GGAGGGTGTCCTTTGCTTGG
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]