GgaEX6015433 @ galGal4
Exon Skipping
Gene
ENSGALG00000001964 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr17:7879334-7880685:+
Coord C1 exon
chr17:7879334-7879441
Coord A exon
chr17:7879864-7880025
Coord C2 exon
chr17:7880570-7880685
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCTTGAATCTGCAGGTG
3' ss Score
10.73
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGGGACAGTAAGGTGAATGAGAGGAAGCTGGACTACAATAAAACCATTCAAGCACTTACCCTTCCTAAGGTCGTTCCGGACACAAACCCCTATCGATCCAGCTCTG
Seq A exon
GTGATGTCACAACTCGCTTTGATGAAGTATTCTGGTTTGGTGACTTCAACTTCCGACTAAATAAGGACCGCGAAACTGTGGATTCCATCTTGAACCAAAATCCAGAAACAGGAGTCTCCAAACTACTGGCATATGACCAGCTTACCAGTGAAATGGGGAGAG
Seq C2 exon
GGTCTATTTTCAAAGGATTCCAAGAGGCTGACATTCATTTCCGTCCTTCCTACAAGTTTGACATAGGAAAGGACAGCTATGACACCACTTCCAAACAGAGGACTCCTTCCTACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.103
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(12.8=100)
A:
PF0337218=Exo_endo_phos=FE(19.2=100)
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACAGTAAGGTGAATGAGA
R:
GGAGTCCTCTGTTTGGAAGTGG
Band lengths:
213-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]