DreEX0039475 @ danRer10
Exon Skipping
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64378366-64393110:-
Coord C1 exon
chr5:64392483-64393110
Coord A exon
chr5:64382587-64382748
Coord C2 exon
chr5:64378366-64379227
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTGATCTCGTTTACCCACAGCTG
3' ss Score
9.38
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
TTGAGGAACAGCCAGGAGAGTCTCACGGATCCGGGAGAGACGGGTTCTTCTACTGATTCTCTCAAAGATGTTGCCTCAGCAAACGGTCAAACCCTTGCATCTCGACGTCCTCTCGATCTCCAGCACATGGAGATGCCACCGTTCAGGATTAGGACCGGGAGCTTGTCCGAGACGGATGTGTCTCCTCATGACCTTTGTGATCCGAATAAAGAGCGCATGAAACCATCCAGAATCGTTCTGTCTCCTCTGCAGCCCACAGGCACGTATCCTCTTCTGGAGAACAGCACCGCCTCTGCGTCTTTAAGAACAACTAATAGGATTGACAGGGATTGTTTGGATTACGGTGTGGTGGGGAGAAGAGGGCGGTCGGAGAGGCTTCACAGGAATCTGAGCGATAGCCGGCTGTTGGACACCATGGTGTCCGACAATACATCTGTCCATTCCATGAAGTCCACATATAGCGTTCTGAACCCCATCAGACCTCGGGATGTGAGGAACAG
Seq A exon
CTGATGTCACGACCCGTTTTGATGAAGTCTTCTGGTTTGGAGATTTCAACTTCCGCCTGAATAAAGCCAGAGGAGACGTGGAGGCCATTTTAAATCAGGGCGTTGGCGTTGATATGAGCCCGTTATTACAACATGATCAGCTGACGAGAGAGATGAAGGAAG
Seq C2 exon
CATTCCTCTGGGCGCTGGCCTTTTCGACAGGAGTCTGTACCTCGAAGGAATCCGACGGAGAATCACCAGAGAGCTGAAAAAGAGAGAGGCGGTCATGAAAAACCAGAACAACAGCACAGTCTGCTCCATATCCTGATCCGGGACCAGTGTGCGACAGCCATAAGGTGCTAAAACTGATCATTTTCAAACACGCCTGGTGACTCGGAAAGCTGGACTTTCAGGACCGAGGGATAACTCGGTTTACTGTCACTTAAGTGCACAGCCCGCGGACCAAAGCACTACAGCTGGTGTTGGATTAAATATATAAAAACATGACTTTATTCCTATGATTTAATCTTTAAATTATACTGACCAGAGTAAAGGAAGTTAACAGTACTGTACATTCACTATTCCTAATGCGTTTCTTTGTTTTACTTCATTTAACTTGCAAGCTGAAACAGTCTGTGCTGTGTATGGTTTCAATGTATAGCATCTCATGGCCTTGTTAAAGGGACAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926_MULTIEX1-6/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.752 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
PF0337218=Exo_endo_phos=FE(19.2=100)
C2:
NO
Main Skipping Isoform:
ENSDART00000167616fB3297
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACGGTGTGGTGGGGAGAA
R:
ACCGCCTCTCTCTTTTTCAGC
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]