HsaEX6064024 @ hg19
Exon Skipping
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:21474]
Coordinates
chr9:139325454-139327038:-
Coord C1 exon
chr9:139326931-139327038
Coord A exon
chr9:139326276-139326437
Coord C2 exon
chr9:139325454-139325569
Length
162 bp
Sequences
Splice sites
3' ss Seq
CATGGCCCACTGTGCCGCAGCGG
3' ss Score
6.63
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CAGGTGACGGGAAGGTGGCGGAGCGGCTGCTGGACTACACCAGGACTGTACAAGCCCTGGTCCTGCCCAGAAATGTGCCCGACACCAACCCCTATCGCTCCAGCGCAG
Seq A exon
CGGACGTCACCACCCGCTTCGATGAGGTGTTCTGGTTTGGAGACTTCAACTTCCGCCTGAGTGGCGGGCGCACAGTCGTGGACGCCCTCCTGTGCCAGGGCCTGGTGGTGGACGTGCCGGCGCTGCTGCAGCACGACCAGCTCATCCGGGAGATGCGGAAAG
Seq C2 exon
GGTCCATCTTCAAGGGCTTCCAGGAGCCGGACATCCACTTCCTCCCATCATACAAGTTTGACATCGGGAAGGACACGTACGACAGCACCTCCAAGCAGAGGACGCCCTCATACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(12.8=100)
A:
PF0337218=Exo_endo_phos=FE(19.2=100)
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACGGGAAGGTGGC
R:
GGGCGTCCTCTGCTTGGAG
Band lengths:
214-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)