BtaEX6047198 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001354 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr11:103929175-103930007:-
Coord C1 exon
chr11:103929900-103930007
Coord A exon
chr11:103929388-103929549
Coord C2 exon
chr11:103929175-103929290
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCGCTCATGCCCCAGCGG
3' ss Score
6.18
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTGGAGACGGGAAGGTGGGCGAGCGGCTGGTGGACTACAGCAAGACTGTGCAGGGCCTGGCCCTGCCCAAGAACGTGCCGGACACGAGCCCCTACCGCTCCGACGCTG
Seq A exon
CGGATGTCACCACCCGCTTCGACGAGGTCTTCTGGTTCGGGGACTTCAACTTCCGCCTGAGCGGGGGGCGGGCGGCCGTGGAGGCCATCCTGAAGCAGGACCTCAGCTCCAGCGTGCAGGCCCTGCTGCAGCACGACCAGCTCACCCGCGAGATGCAGAGAG
Seq C2 exon
GGTCCATCTTCAAGGGCTTCCAGGAGCCGGACATCCACTTCCTGCCGTCATACAAGTTCGACGTCGGGAAGGACTCGTATGACACCACCTCCAAGCAGAGGACCCCATCCTACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001354-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(12.8=100)
A:
PF0337218=Exo_endo_phos=FE(19.2=100)
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACGGGAAGGTGGG
R:
GGATGGGGTCCTCTGCTTGG
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]