MmuEX0024214 @ mm9
Exon Skipping
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26254753-26255663:-
Coord C1 exon
chr2:26255556-26255663
Coord A exon
chr2:26254933-26255094
Coord C2 exon
chr2:26254753-26254868
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTACCACGTGCCCAGGGG
3' ss Score
6.17
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGGAGATGGGAAGGTAGCAGAGCGGCTACTGGACTACAGCAGAACCATCCAAGCCCTAGCCCTGCCCCGGAATGTGCCAGACACAAATCCCTACCGCTCTAGTGCAG
Seq A exon
GGGATGTCACTACCCGGTTTGATGAGGTCTTCTGGTTTGGGGACTTCAACTTCCGCCTGAGTGGTGGACGAGTGGCTGTGGAGGCCTTCCTGAAGCAGAAACCTGAGGTGGATGTGCTGGCTCTCCTCCAACACGACCAGCTCACCCGGGAGATGAAGAAAG
Seq C2 exon
GGTCCATCTTCAGGGGCTTTGAGGAGGCAGAGATTCACTTTCTTCCATCCTACAAGTTTGACATTGGGAAGGACACCTACGACAGCACCTCCAAGCAAAGGACACCCTCCTACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-'6-12,'6-10,7-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.006 C2=0.119
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(12.8=100)
A:
PF0337218=Exo_endo_phos=PD(27.6=88.9)
C2:
PF0337218=Exo_endo_phos=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATGGGAAGGTAGCAGA
R:
GGAGGGTGTCCTTTGCTTGG
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: