GgaINT0123946 @ galGal4
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7751040-7752660:-
Coord C1 exon
chr17:7752473-7752660
Coord A exon
chr17:7751163-7752472
Coord C2 exon
chr17:7751040-7751162
Length
1310 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
ACCTGCTCTCCTTTGCTCAGCCG
3' ss Score
6.4
Exon sequences
Seq C1 exon
AGTTCGCCGCTGAACAGCAAGCCATGCAGTAGGAGCCCACGCTTCCCACTGAGGAGTGACCCCGGTGTGTGCCACACAGCCCAGAGCGCTGCAGGGAGGGGACAGGACATGCACCGAATCAGCTGCCTTCTTTCGGGACTCGCCTTCATCCTCAGTGCCACCAGCACTGACAGCTTTGCCCGGGTGGG
Seq A exon
GTAAGCCTCCTTTTAACCTGCATCTCCCAGATCTGTCCTCACGAGCACGTGCTGAGCCCCTCTGCAAGGCATGGCATGGCATGGCTCGTCCTCACCCACAATGGAGAGCACTGTTCAGCTGGTGGGGCACCAGGGGCACCTGGCTGGGTGAGGAGCTGGGAGGAGGCTCTGCTGAGTCACATCTTGGCAGGGGTCTGTTTTCTTCCCAGGAATTGGGTCTAACGCTGTCCCTGCATCCCAGCACAGCCCGAGCATCTCCATGGCCAAAGGAGGCTCAGTGCTCAGTGCCCCGGTTTCTTCCCCCACTGAAAGGAGCTCGAGCTCAGCCCCCACCCCCCAGAAAATGAGATCCAGCTCATTTTCTCCAAAGTTTGTTTTTACATTGAAATGCTCCCCTCTAGAATTAAACCTTTCACATTCTGGTCGTGACTAAACCCACAGGCTGAATTCCTCTCTTGCATGCACGCAACTGCAGCTATAGCTTTATTATAACATTTGCAAAGCAAACAATTTCCATTTAAAAACTGCATCTTCTGTAATGTTAACCAGTGAAGCTAAAAGGAGTTTTCTGGAGTTAATGGAAGCCAGCTGATGTCCGTGCTAATTCCCAGCCTTTTAATTCTAGTTTATAATTGAGCTGGGAGGCTGAAACGAGCACACAAGTTCCTTGGTGGGACTGACCTGCTGGAGAATGTTGAAGAGAAAGAATCTTTAACTGATACTGTTTTGGCTGTTGGCCTTGGGAAAGTTTTTGACTGGGTCTCAGTTATCTCAGGAGAAACAGAGGGTGACTTTCCTTTGTCTTCTACCTTTTTACCATCAGCCTGATTCTTTCTGTGCAATCGTTGAATTGTTGGCGTCCGAAGGCACATCAGGTTCAGGAGTGCAGAAAGCTCAGAAAGGAAAAGATACGTTTAAAAAGTGATTGATTTTAGGTTGAAGGGAGATAAAGAATGGAAGGAGAACTACTCTGAGTAAACCTCCCCTAAATCTGAACCCCAATTGTTCAGGATGGAGAAAGTTTGCAGCGTATGAGGGGTGTCAGTGCCTTTGTGCAGGGGCTAGGGAGGAAGGGGCCGTGCAGCCCATAGTGCTGTGGCTTTGTGTTGTTGCCCCTAACAGCATGAAGTCACCTCCTGGGTCACTTGGGCAATGAGCCACTGCCTCTTAAATAGCCGTGTGCAATTAGGAGTTGTCAGGCCACATCCCCAGCTGGTGTAAATCAGCATGGCCCTTTCAGGATGGAGGGGGCGGGGGGGAAGCAGTGAGTTGTTTGCCAACCACTGTCTGACCTGCTCTCCTTTGCTCAG
Seq C2 exon
CCGCAGGACCTGTGCTGCAGAGCCGCGGAGCCGCACAGCCACCCACACCGAGTCCCACGTGCAGCCTGTGTACCTGCCCTACCTCACCACCTGCCAGGGCCACCGCCTGTGCAGCACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
NA
C2:
PF075468=EMI=PU(57.7=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCATGCAGTAGGAGCC
R:
CTGTAGGTGCTGCACAGGC
Band lengths:
294-1604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]