GgaINT0123950 @ galGal3
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8431311-8432260:-
Coord C1 exon
chr17:8432096-8432260
Coord A exon
chr17:8431376-8432095
Coord C2 exon
chr17:8431311-8431375
Length
720 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ATTTTGGCCCTTTCTTTCAGATC
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATGCGGATGAGTGTGCAGGCCGGAGCCACGGGTGCAGTCAGCTCTGCATCAATACAGCTGGGAGCTTCCACTGTGCCTGCCGGGATGGCTTTAGCCTCGCTGCTGATAACAAGGCATGCCAGCCCGTGGTGCCAGGCCCCAAGCCAGGAACCTTCAGCCAAGCAG
Seq A exon
GTAACTGCCCACTGCTGCAGCATGGCAGCAGCTGCTCAGAGGCTTTGGTGAAACCTGGGATTAACACAGCAGCACAGGGTGGCTAGAGAAGGACTGGCAAGGGCTAGGAGATGGAACAAAACCTGCCTTGTGCACAAGCCCAGGCCCTGCAGGGGTGATAAAGCCTGGCTGTGGTGTGTGGTGGTCAGGTCTGTGGCTGTGCTCTCCGTCATCATCGTCATTCTTCCTGTGGGGCACATCCATCCGGAGCCACAAGGAGCATCAGGAGCTGCTGGTGACGGCCCATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTGGTCAGCACTGGCATCACGTGGGCAACGCCTGGGAGAGCCATCTACATGCGTCCCAAACACTGCCTGCTTTTGCCCTGTGTCTGCAGCAGGGCTCACCATGGGACAGGGAAGACATGAGTGCTAACTCATCTGTTGACAGCAAAGGCACGAAAGGATATTTTGTCCTTGAAGCATCACCCCACAGCCTAAGAAACTCCCTCACTTTATTCTAGGTACTGCTGTGCTTGCAGCAGGCATTGCATCCAGTTCCTGAACCCTGAGATTCCCTAGGAGGGGAGCACCAAGCAGCAGTGCTTACCTGAGCCCAGCACATCCCACTTCACCTCAGGCAATGGATTTTTACTAAGTAACTTATTTTGGCCCTTTCTTTCAG
Seq C2 exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.727
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGGATGAGTGTGCAGG
R:
CTGCTCCAGTGCTTCCAC
Band lengths:
230-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]