MmuINT0055817 @ mm10
Intron Retention
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26590899-26591728:+
Coord C1 exon
chr2:26590899-26591063
Coord A exon
chr2:26591064-26591663
Coord C2 exon
chr2:26591664-26591728
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GCGCCTGGATCTGCCCCCAGGAG
3' ss Score
7.24
Exon sequences
Seq C1 exon
ATGTTGATGAATGCAGTACAGGAGAGGCCAGTTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGGGATGGGAGGGACAAAGCCCATCTGCAGATGGGACGCGCTGCCTGTCTAAGGAGGGGCCCTCCCCGGTGGCCCCAAACCCCACAGCAG
Seq A exon
GTAAACTTGCCTTTCCCACCTGCTATGACTGACCTGGGTAGTCCTTGGGTTGTGAGCACTGTTGTGTGGCTGAGCTGAACATGGAAGACACAGGGGCAGCTAGCCCTGGGTGGAGGCCAGCACTATGCTGTGAGGGCTGGCTCCTTGCCTGGTGGAAGGGGCCACTTTACCCTGAAGAGGTTTCTGGAAGGCATTGTGGGGCGTAAGGCATACCTGGGAGCCCCATCTCAGCCAGTTGAGTGAAAGAGCCCCACACTGGCTCTGGCAGCCTGGAGACGCCGCATCTTTGCCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCGGTCAGCAGCCCAGCGCCAGGAATGCATCGGACCTGGGTAAGGACCACGGCTGGCACTCGGGGTGACCCGAGGCTGCTCTTAGTTAGCTGTGTGCTTTGGCAGTGCCTGAGACTGACAGCCAGAGACTTTGCATCTCCAGGCTCTGCCCCCACAGCTGTGGCAGTGGCCACAGGCCTTCCTCAGGCCTGTGTGGGACAGGAAGCTCCCCTCCCTGACTAGCGCCTGGATCTGCCCCCAG
Seq C2 exon
GAGTGGACAGCATGGCGAGAGAGGAGGTGTACAGGCTGCAGGCTCGGGTTGATGTGCTAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921:ENSMUST00000166920:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=71.4)
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGATGAATGCAGTACAGGAGA
R:
CTGTTCTAGCACATCAACCCGA
Band lengths:
230-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types