RnoINT0053394 @ rn6
Intron Retention
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4042011-4042797:+
Coord C1 exon
chr3:4042011-4042175
Coord A exon
chr3:4042176-4042732
Coord C2 exon
chr3:4042733-4042797
Length
557 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GCGCCTGGATCTGCCCCCAGGAG
3' ss Score
7.24
Exon sequences
Seq C1 exon
ATGTTGATGAATGCAGTACAGGAGAGGCCAGGTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGTGTTGGGAGGGGCAGAGCCCATCTGCAGATGGGGTGCTCTGCCTGCCTAAGGAGGGGCCCTCCCCGGTGGCACCAAGTCCCACGCCAG
Seq A exon
GTAAACTTGTCTTTCCGACCTGCGGTGACTGGCCTGGATAGTGAGCACTGTTGTGTGGTTGAGCTGAGCATGGAAGCTACAGAGGGCAGCTAGCCCTGGGTGGAGGCCAGCACTATGCTGAGGGCTGATTCCAGATATCCTGGACTGGTGGGGGGAGGTTCCTCACCTGGGTGGGAGGGGCTGCTTTCCCCTGAAGAGGTTTCCGGAAGGTATTGTGGGGCGGAAGGCATAGCTGGGAGCCTCACCTCGACCAACTGAATGAAAAAAGAGCCCCACCCTGACTCTGGCAGCCTGGAGCCGTGTCTTTGCCGGTGACAGCACATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGTGGTCAACAGCGCAGCACCGGGAGTGCATCGGACCTGGGTAAGGACCATTGTTGGCACTCAGGGTGGCCAGAGAGGCTTTGCATCTCCAGACTCTGCTTCCACAGCTGTGGCCGAGGACTCAGGCCTCTGTGGGACAGGAAATCCCCCTCTCTGACTAGCGCCTGGATCTGCCCCCAG
Seq C2 exon
GAGTGGACAGCGTGGTGAGAGAGGAGGTGTACAAGCTGCAGGCCCGGGTTGATGTATTAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388:ENSRNOT00000026318:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=71.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGATGAATGCAGTACAGGAGA
R:
CTGTTCTAATACATCAACCCGGGC
Band lengths:
230-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]