GgaINT1012124 @ galGal4
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7748034-7748983:-
Coord C1 exon
chr17:7748819-7748983
Coord A exon
chr17:7748099-7748818
Coord C2 exon
chr17:7748034-7748098
Length
720 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ATTTTGGCCCTTTCTTTCAGATC
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATGCGGATGAGTGTGCAGGCCGGAGCCACGGGTGCAGTCAGCTCTGCATCAATACAGCTGGGAGCTTCCACTGTGCCTGCCGGGATGGCTTTAGCCTCGCTGCTGATAACAAGGCATGCCAGCCCGTGGTGCCAGGCCCCAAGCCAGGAACCTTCAGCCAAGCAG
Seq A exon
GTAACTGCCCACTGCTGCAGCATGGCAGCAGCTGCTCAGAGGCTTTGGTGAAACCTGGGATTAACACAGCAGCACAGGGTGGCTAGAGAAGGACTGGCAAGGGCTAGGAGATGGAACAAAACCTGCCTTGTGCACAAGCCCAGGCCCTGCAGGGGTGATAAAGCCTGGCTGTGGTGTGTGGTGGTCAGGTCTGTGGCTGTGCTCTCCGTCATCATCGTCATTCTTCCTGTGGGGCACATCCATCCGGAGCCACAAGGAGCATCAGGAGCTGCTGGTGACGGCCCATTATTACTTTTGGTACGCGCTGTGACACTTCAAACTCGTACCGTGAGTAATAATGCGCTGTGGTCAGCACTGGCATCACGTGGGCAACGCCTGGGAGAGCCATCTACATGCGTCCCAAACACTGCCTGCTTTTGCCCTGTGTCTGCAGCAGGGCTCACCATGGGACAGGGAAGACATGAGTGCTAACTCATCTGTTGACAGCAAAGGCACGAAAGGATATTTTGTCCTTGAAGCATCACCCCACAGCCTAAGAAACTCCCTCACTTTATTCTAGGTACTGCTGTGCTTGCAGCAGGCATTGCATCCAGTTCCTGAACCCTGAGATTCCCTAGGAGGGGAGCACCAAGCAGCAGTGCTTACCTGAGCCCAGCACATCCCACTTCACCTCAGGCAATGGATTTTTACTAAGTAACTTATTTTGGCCCTTTCTTTCAG
Seq C2 exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.682
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGGATGAGTGTGCAGG
R:
CTGCTCCAGTGCTTCCAC
Band lengths:
230-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]