MmuEX0016421 @ mm10
Exon Skipping
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26590899-26592280:+
Coord C1 exon
chr2:26590899-26591063
Coord A exon
chr2:26591664-26591728
Coord C2 exon
chr2:26592118-26592280
Length
65 bp
Sequences
Splice sites
3' ss Seq
GCGCCTGGATCTGCCCCCAGGAG
3' ss Score
7.24
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGTTGATGAATGCAGTACAGGAGAGGCCAGTTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGGGATGGGAGGGACAAAGCCCATCTGCAGATGGGACGCGCTGCCTGTCTAAGGAGGGGCCCTCCCCGGTGGCCCCAAACCCCACAGCAG
Seq A exon
GAGTGGACAGCATGGCGAGAGAGGAGGTGTACAGGCTGCAGGCTCGGGTTGATGTGCTAGAACAG
Seq C2 exon
AAACTGCAGTTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCACAGAGCATGGGCTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGAGTGAGCAGGTGTCCTTCTTGGAGGAACATCTGGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.358 A=0.234 C2=0.252
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=71.4)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGATGGGAGGGACAAAG
R:
GCCAGGATCTTGTAGCCCATG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types