GgaEX1021774 @ galGal3
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8430940-8432260:-
Coord C1 exon
chr17:8432096-8432260
Coord A exon
chr17:8431311-8431375
Coord C2 exon
chr17:8430940-8431027
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGCCCTTTCTTTCAGATC
3' ss Score
10.84
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGCGGATGAGTGTGCAGGCCGGAGCCACGGGTGCAGTCAGCTCTGCATCAATACAGCTGGGAGCTTCCACTGTGCCTGCCGGGATGGCTTTAGCCTCGCTGCTGATAACAAGGCATGCCAGCCCGTGGTGCCAGGCCCCAAGCCAGGAACCTTCAGCCAAGCAG
Seq A exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
Seq C2 exon
AAACTCCAGTTGGTGCTGGCTCCCTTCCACAACCTCATGCCATCTGCACCAGAGGACGTCGGCACAGACCCCATCAGCGAGTGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-'9-11,'9-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.727 C2=0.577
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCAATACAGCTGGGAGC
R:
CAGATGGCATGAGGTTGTGGA
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]