RnoEX0031154 @ rn6
Exon Skipping
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4042011-4043529:+
Coord C1 exon
chr3:4042011-4042175
Coord A exon
chr3:4042733-4042797
Coord C2 exon
chr3:4043367-4043529
Length
65 bp
Sequences
Splice sites
3' ss Seq
GCGCCTGGATCTGCCCCCAGGAG
3' ss Score
7.24
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGTTGATGAATGCAGTACAGGAGAGGCCAGGTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGTGTTGGGAGGGGCAGAGCCCATCTGCAGATGGGGTGCTCTGCCTGCCTAAGGAGGGGCCCTCCCCGGTGGCACCAAGTCCCACGCCAG
Seq A exon
GAGTGGACAGCGTGGTGAGAGAGGAGGTGTACAAGCTGCAGGCCCGGGTTGATGTATTAGAACAG
Seq C2 exon
AAACTGCAGCTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCCCGGAGCATGGGCTGCAAGATCCTGGCAGCCTGCTGGCCCACTCCTTCCAGCAGCTGGACCGGATTGACTCACTGAGCGAGCAGGTCTCCTTCCTGGAGGAACAGCTGGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388-'16-17,'16-15,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.091 C2=0.127
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTCTGCCTGCCTAAG
R:
TCAGTGAGTCAATCCGGTCCA
Band lengths:
180-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]