BtaEX6098222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27025149-27025710:-
Coord C1 exon
chr23:27025540-27025710
Coord A exon
chr23:27025385-27025464
Coord C2 exon
chr23:27025149-27025302
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCCTTGGTCCCCAGTTC
3' ss Score
9.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGTGGATGAATGCAGAACCGGCGTCACTCTCTGCTCGCATCGCTGCCTCAATACGGCGGGCAGTTTCACCTGTGGCTGCCCGCACGGCCTGGTGCTGGGCCTGGATGGGCGTACTTGCGCGGAGAGGGCCCCAGAGCCCCCAACCAGTGCCAGCATCCTCAATGTGGCCG
Seq A exon
TTCGTGAGGCTGGACTTGATAAGCGTGCCCTGAGGCGGGAGATTGGCGAGCTGCGAGGCCGCCTGGAGAGGCTGGAGCAG
Seq C2 exon
TGGGCCGGTCAGGCTGGGGCCTGGGTCCGAGCAGTGCTGCCCGTGCCCCCGGAAGAGCTGCAGCCCGAACAGGTGGCGGAGCTGTGGGGCCAGGGTGATAGGATCGAGTCTCTCAGTGACCAGGTGCTGCTGCTGGAGGAGAGACTGGGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410-'6-8,'6-7,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=69.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCAGCATCCTCAATGTG
R:
AGTCTCTCCTCCAGCAGCAG
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]