RnoEX0031160 @ rn6
Exon Skipping
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4378206-4379167:-
Coord C1 exon
chr20:4378997-4379167
Coord A exon
chr20:4378836-4378903
Coord C2 exon
chr20:4378206-4378757
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGCCCTAGTTCGGGAAGCAGACA
3' ss Score
-3.52
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTGGATGAATGCAGGACCAGCCTTACCCTCTGCTCTCATGGCTGTCTCAACACGCTGGGCAGCTTCACCTGCAGCTGTCCGAACCCCCTGGTGCTGGGGCCCGATGGACGCGCCTGTGCAGGGGGCCCTCCGGAGTCCTCGACGAGTGCTGGCATCCTCAGTGTGGCAG
Seq A exon
ACAGCGAGGAGCATGCCCTGAGGCGGGAGGTTGCAGAGCTTCGTGGGCGTCTAGAGAGGCTGGAGCAG
Seq C2 exon
TGGGCCACACAGGCTGGGGCCTGGGTTCGAGCAGTGCTGCCGGTGGCCCCTGAAGACCTGCGGCCTGAACAGGTGGCTGAACTTTGGGGCCGGGGTGACAGGATCGAGTCCCTCAGTGACCAGGTGCTGCTACTGGAGGAAAGGCTGGGTGCCTGTGAGTCCCCCGCTCCTCCTCCATGATTGAAGACCCAGCCTCAAGTCAGCACTGCACTCCTGAAACCCTCCCTCCCACACTGTCCTCGCCCTGTCCTGGTCCCCAGGCCACTTGTGTGTTGTTGGGCGACAGGTCTCCAGGCCACAGCCACCTTGCCACTTTGCCATTAACCAGGTTCCTGTGAGGACAACAGCCTGGGCCCAGGCCTCCATGGATGACAAGGAATGCCGGCAGCGGCTGGGGTCCCTAACTCACACAGAAACTATGCCTGCTAACGTGGGATCCCAAGATCTGGTACCAACCCCGAGGTGCTACAGCCACAGAGAACCCCACGTCTCTCTTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436-'8-15,'8-14,9-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.037 C2=0.223
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=69.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTGGCATCCTCAGTG
R:
TTTCCTCCAGTAGCAGCACCT
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]