DreEX0029203 @ danRer10
Exon Skipping
Gene
ENSDARG00000100657 | egfl7
Description
EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
Coordinates
chr21:7668870-7681287:-
Coord C1 exon
chr21:7681141-7681287
Coord A exon
chr21:7670603-7670679
Coord C2 exon
chr21:7668870-7669044
Length
77 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTTTTGTTCTTTAAGGTG
3' ss Score
10.56
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTAAGGAGGCTCAGAGCTGCTCTCAGAAGTGTGTGAATACGCTGGGCAGTTTTCAATGTGTGTGTGAGGAGGGATTCAGTCTGGATGAAGATAAAGTCACATGTTCAAAAAATCCTGCTTCCTCACGGAACACTG
Seq A exon
GTGGAGGTTTGGGGTTGGTGGAGAACGTTACTGAAGAGGTTCAGATCCTAAAAAACCGAGTGGAGCTCCTGGAGCAG
Seq C2 exon
AAACTGGAGATGGTTCTAGCACCCTTCACCACTCTCCTACCTCTGGACGGAGCAGGGGACACCAACAGCTTCCTGTCTGAGCGAACCAATTTCCTGTCCCACTCTCTGCAGCAACTGGACCGCATCGAGTCGCTCAGCGAACAGGTCGGCTTTCTGGAGGAGAGAATCGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100657_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=78.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGGCAGTTTTCAATGTG
R:
GACAGGAAGCTGTTGGTGTCC
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]