GgaEX1021774 @ galGal4
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7747588-7748983:-
Coord C1 exon
chr17:7748819-7748983
Coord A exon
chr17:7748034-7748098
Coord C2 exon
chr17:7747588-7747750
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGCCCTTTCTTTCAGATC
3' ss Score
10.84
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGCGGATGAGTGTGCAGGCCGGAGCCACGGGTGCAGTCAGCTCTGCATCAATACAGCTGGGAGCTTCCACTGTGCCTGCCGGGATGGCTTTAGCCTCGCTGCTGATAACAAGGCATGCCAGCCCGTGGTGCCAGGCCCCAAGCCAGGAACCTTCAGCCAAGCAG
Seq A exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
Seq C2 exon
AAACTCCAGTTGGTGCTGGCTCCCTTCCACAACCTCATGCCATCTGCACCAGAGGACGTCGGCACAGACCCCATCAGCCGACTGTCCCACTCCCTCCAGCAACTGGACAGAATCGACTCCTTGAGTGAGCAGATCTCCTTCCTCGAGGAGCGGCTGGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-'15-14,'15-11,18-14
Average complexity
S
Mappability confidence:
92%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.682 C2=0.255
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAACCTTCAGCCAAGCAG
R:
CCTCGAGGAAGGAGATCTGCT
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]