MmuEX6077142 @ mm10
Exon Skipping
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34613777-34614340:-
Coord C1 exon
chr17:34614170-34614340
Coord A exon
chr17:34614009-34614091
Coord C2 exon
chr17:34613777-34613930
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCCTTTGTCCTAGTTC
3' ss Score
9.35
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTCGATGAATGCAGGGCCAGCCTTACCCTCTGCTCTCATGGCTGCCTCAACACACTGGGCAGCTTCTTGTGCAGCTGTCCACACCCCCTGGTGCTGGGTCTCGATGGACGCACCTGTGCAGGGGGGCCTCCAGAGTCCCCGACAAGTGCCAGCATCCTCAGTGTGGCAG
Seq A exon
TTCGGGAAGCAGACAGCGAAGAGGAGCGAGCCCTGAGGTGGGAGGTTGCAGAGCTTCGTGGGCGTCTGGAGAAGCTGGAGCAG
Seq C2 exon
TGGGCCACACAGGCTGGGGCCTGGGTTCGAGCAGTGCTGCCCATGCCCCCTGAAGAGCTGCGGCCTGAACAGGTGGCTGAGCTTTGGGGCCGGGGTGACAGAATTGAGTCCCTCAGCGACCAGGTGCTGCTACTGGAGGAAAGACTGGGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-'9-11,'9-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.012 C2=0.082
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=69.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGCCAGCATCCTCAG
R:
TTTCCTCCAGTAGCAGCACCT
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types