MmuINT1009368 @ mm10
Intron Retention
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26591664-26592280:+
Coord C1 exon
chr2:26591664-26591728
Coord A exon
chr2:26591729-26592117
Coord C2 exon
chr2:26592118-26592280
Length
389 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCAACCTTCCTTCCAAACAGAAA
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAGTGGACAGCATGGCGAGAGAGGAGGTGTACAGGCTGCAGGCTCGGGTTGATGTGCTAGAACAG
Seq A exon
GTGAGGCTTGGTTGGGAGTGGATCTTGCTGGTGTCCCCAGACCAGTCTCTAGGGCCGTGGTTCCAAATCATGGGACGGTTGAGTTTTATGGGGAAGGGTTGTAAGGATGCTGGCTTTCTTACTATGACAGGTAGCAATGTATGGGATTCCTCAGGCTGGGAAGAACTTAGCCTGTTATACAAGGATTCTGGCAAGTCTCAAGCCTCTTCTAGCTTCTGTCTCTGGGTCCCAGGACCTTATAGCTAGATTGTGGGTCTGTTACACCCCTGTGTCTGCTAGACCTTGGGGTCCCTCTCCTGCAAGCAGGGCCCTGCTGCTATAGTTCAGCAGAAGCCTTATCATGCACTTACATTCCCATGGAATAGAAGTCCAACCTTCCTTCCAAACAG
Seq C2 exon
AAACTGCAGTTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCACAGAGCATGGGCTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGAGTGAGCAGGTGTCCTTCTTGGAGGAACATCTGGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921:ENSMUST00000166920:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.252
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCATGGCGAGAGAGGAG
R:
GGACCCCAGATGTTCCTCCAA
Band lengths:
222-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types