HsaINT0054581 @ hg19
Intron Retention
Gene
ENSG00000172889 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:20594]
Coordinates
chr9:139565402-139566540:+
Coord C1 exon
chr9:139565402-139565466
Coord A exon
chr9:139565467-139566377
Coord C2 exon
chr9:139566378-139566540
Length
911 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGCCCTTCTGCACCCACAGAAG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GAGTGGACAGTGCAATGAAGGAAGAAGTGCAGAGGCTGCAGTCCAGGGTGGACCTGCTGGAGGAG
Seq A exon
GTGAGGCATTGGTGGGGGGGGGGGGGGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGGTGTGGAGGGGCAGGCAGTCCAGGGTGAACCTGCTGGAGGAGGTGAGGCATCGGGGGGGTAGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGGCGTCGGGGGGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGGCGTCGGGGGGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGATGAGGCGTCGGGGGGGGAGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGACGTCGGCAGGGGGCAGGTCTTCACAACAGCAGAGGCCCAGGCCCGGGTACAGGCTCCGTAGTCTCCTGGGACATGGTCCCGACCCACGGATGGCTGGGGGTGGTCTGAAAAGGTCCTGGCCCTGGGGAGGTGGCTTCCTCGCTGCTGACTGCCGAGGGGGCCCTGGCCTGGATCCATGCTGGGCAGAAGCAGCTGGACACTGACCAGGACCCCCCAGGGCCGGAGGAACCAAGCTTGACAGCCCCCCAGACAATACACAGAGCCTGGACCCAGACGAGACCTCCCCACCCCCCCATCTTTGTCCCCACCAGGACAAAGAGCTCTTGCCAGTCTTCCCACTGGCCAGTGGTCCAGCTGTCCCCCTAGTTCTCCTGCCAGGGACCCCAAGGCTGGGACCACCCCGCCAGCCTGATGCCCCAGGCACCCACTCTGCGGCAAGCTTTTCTGCCACGGCAGCCCCCTCTAGTGGACACTTGGAGCCCTGCCGCGGAGGCGGGGGCTGGAGGCTTGTGGAGCCCTTCCCAGGGGTCCTCCCTAGACCCCGGTGGAGCAGAGAGGGCGGGGGCCGGCCCAGGGTCACTGCCCTTCTGCACCCACAG
Seq C2 exon
AAGCTGCAGCTGGTGCTGGCCCCACTGCACAGCCTGGCCTCGCAGGCACTGGAGCATGGGCTCCCGGACCCCGGCAGCCTCCTGGTGCACTCCTTCCAGCAGCTCGGCCGCATCGACTCCCTGAGCGAGCAGATTTCCTTCCTGGAGGAGCAGCTGGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889-EGFL7:NM_201446:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGACAGTGCAATGAAGGA
R:
CCAGCTGCTCCTCCAGGAAG
Band lengths:
222-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)