GgaINT1012125 @ galGal4
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7747588-7748098:-
Coord C1 exon
chr17:7748034-7748098
Coord A exon
chr17:7747751-7748033
Coord C2 exon
chr17:7747588-7747750
Length
283 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTCCCCCTTCTCCCTGCAGAAA
3' ss Score
12.71
Exon sequences
Seq C1 exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
Seq A exon
GTGGGTGTTTTGTGTCCCCCTCTGCCCCTTCCTCCCCTGCCCGTGGCCACGTGCAGCCGGCTCCAAGCCCAGGCTGTGCACAGCCAGGGTTTCCCTCCACCCCTGCTCTATTTTTAACACCACACTGACCTCTCAGGCAGGGAGCAGGCAAGGATCCCAGCTGTGCTCCACACTGCAGGCAGAGCCTCACAGCAGCTCTTCCAGCCCAGCGGCCCTTTGAACACAACCAAATACTGCGCTGAGGCTCCTCCTGACTGCTCATGGCTCCCCCTTCTCCCTGCAG
Seq C2 exon
AAACTCCAGTTGGTGCTGGCTCCCTTCCACAACCTCATGCCATCTGCACCAGAGGACGTCGGCACAGACCCCATCAGCCGACTGTCCCACTCCCTCCAGCAACTGGACAGAATCGACTCCTTGAGTGAGCAGATCTCCTTCCTCGAGGAGCGGCTGGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCCAGTGAAGTGAAGGA
R:
AAGTCTCCAGCCGCTCCTC
Band lengths:
228-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]