RnoINT0053395 @ rn6
Intron Retention
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4042733-4043529:+
Coord C1 exon
chr3:4042733-4042797
Coord A exon
chr3:4042798-4043366
Coord C2 exon
chr3:4043367-4043529
Length
569 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCAACCTTCCTTTCAAACAGAAA
3' ss Score
7.51
Exon sequences
Seq C1 exon
GAGTGGACAGCGTGGTGAGAGAGGAGGTGTACAAGCTGCAGGCCCGGGTTGATGTATTAGAACAG
Seq A exon
GTGAGGCTTGGCTGGGAGTGGGTCTTGCTGGTGTCCCCAGTCCCCAGTCTCTGGAGCTGTGGTTCCAAATCATGGGGGGCTGGGAGTTTTATGGGGAAAAGGTCGTAAGGATGCTGGTTTTTTTTTTTCCATTTTCTTTTCTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGTCAAGTGCTCTACTACTGAGCTAAATCCCCAACCCCGGATGCTGGCTTTCTTACTGTGCTAGGTAGCACTGTATGGGATTCCTTAGTCTAGGGCCCACTTAGATTGCTATACAAGGACTCTGGTAAGTCTCAAGCCACAGACCCCAAGACTCTCCTAGTTCATCTCTGGGGTCCCAGGTCTTTGTAGCTAGATTGTGGATCTGTTAATCACCTGTGTCTACTAGACGCTGGGGTCCCTCTATTGCAAGCAGGGCCCTGCTGCTACAGCCCAGTAGAAAGAAGCCTTACTTCTCACACATGCCCTTACTAGTCTTCCTTACGTTCCCAGGGAACAGAGGTCAAAGAGGTCACTAGGCTTTTTGCAACCTTCCTTTCAAACAG
Seq C2 exon
AAACTGCAGCTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCCCGGAGCATGGGCTGCAAGATCCTGGCAGCCTGCTGGCCCACTCCTTCCAGCAGCTGGACCGGATTGACTCACTGAGCGAGCAGGTCTCCTTCCTGGAGGAACAGCTGGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388:ENSRNOT00000026318:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCGTGGTGAGAGAGGAG
R:
AGGACCCCAGCTGTTCCTC
Band lengths:
223-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]