GgaINT0123951 @ galGal3
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8430940-8431375:-
Coord C1 exon
chr17:8431311-8431375
Coord A exon
chr17:8431028-8431310
Coord C2 exon
chr17:8430940-8431027
Length
283 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTCCCCCTTCTCCCTGCAGAAA
3' ss Score
12.71
Exon sequences
Seq C1 exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
Seq A exon
GTGGGTGTTTTGTGTCCCCCTCTGCCCCTTCCTCCCCTGCCCGTGGCCACGTGCAGCCGGCTCCAAGCCCAGGCTGTGCACAGCCAGGGTTTCCCTCCACCCCTGCTCTATTTTTAACACCACACTGACCTCTCAGGCAGGGAGCAGGCAAGGATCCCAGCTGTGCTCCACACTGCAGGCAGAGCCTCACAGCAGCTCTTCCAGCCCAGCGGCCCTTTGAACACAACCAAATACTGCGCTGAGGCTCCTCCTGACTGCTCATGGCTCCCCCTTCTCCCTGCAG
Seq C2 exon
AAACTCCAGTTGGTGCTGGCTCCCTTCCACAACCTCATGCCATCTGCACCAGAGGACGTCGGCACAGACCCCATCAGCGAGTGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCCAGTGAAGTGAAGGA
R:
CACTCGCTGATGGGGTCTGT
Band lengths:
148-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]