HsaINT0054581 @ hg38
Intron Retention
Gene
ENSG00000172889 | EGFL7
Description
EGF like domain multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr9:136670950-136672088:+
Coord C1 exon
chr9:136670950-136671014
Coord A exon
chr9:136671015-136671925
Coord C2 exon
chr9:136671926-136672088
Length
911 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGCCCTTCTGCACCCACAGAAG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GAGTGGACAGTGCAATGAAGGAAGAAGTGCAGAGGCTGCAGTCCAGGGTGGACCTGCTGGAGGAG
Seq A exon
GTGAGGCATTGGTGGGGGGGGGGGGGGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGGTGTGGAGGGGCAGGCAGTCCAGGGTGAACCTGCTGGAGGAGGTGAGGCATCGGGGGGGTAGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGGCGTCGGGGGGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGGCGTCGGGGGGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGATGAGGCGTCGGGGGGGGAGGCAGGCAGTCCAGGGTGGACCTGCTGGAGGAGGTGAGACGTCGGCAGGGGGCAGGTCTTCACAACAGCAGAGGCCCAGGCCCGGGTACAGGCTCCGTAGTCTCCTGGGACATGGTCCCGACCCACGGATGGCTGGGGGTGGTCTGAAAAGGTCCTGGCCCTGGGGAGGTGGCTTCCTCGCTGCTGACTGCCGAGGGGGCCCTGGCCTGGATCCATGCTGGGCAGAAGCAGCTGGACACTGACCAGGACCCCCCAGGGCCGGAGGAACCAAGCTTGACAGCCCCCCAGACAATACACAGAGCCTGGACCCAGACGAGACCTCCCCACCCCCCCATCTTTGTCCCCACCAGGACAAAGAGCTCTTGCCAGTCTTCCCACTGGCCAGTGGTCCAGCTGTCCCCCTAGTTCTCCTGCCAGGGACCCCAAGGCTGGGACCACCCCGCCAGCCTGATGCCCCAGGCACCCACTCTGCGGCAAGCTTTTCTGCCACGGCAGCCCCCTCTAGTGGACACTTGGAGCCCTGCCGCGGAGGCGGGGGCTGGAGGCTTGTGGAGCCCTTCCCAGGGGTCCTCCCTAGACCCCGGTGGAGCAGAGAGGGCGGGGGCCGGCCCAGGGTCACTGCCCTTCTGCACCCACAG
Seq C2 exon
AAGCTGCAGCTGGTGCTGGCCCCACTGCACAGCCTGGCCTCGCAGGCACTGGAGCATGGGCTCCCGGACCCCGGCAGCCTCCTGGTGCACTCCTTCCAGCAGCTCGGCCGCATCGACTCCCTGAGCGAGCAGATTTCCTTCCTGGAGGAGCAGCTGGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889:ENST00000371699:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGACAGTGCAATGAAGGA
R:
CCAGCTGCTCCTCCAGGAAG
Band lengths:
222-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development