GgaINT0123969 @ galGal3
Intron Retention
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7854313-7855563:-
Coord C1 exon
chr17:7855426-7855563
Coord A exon
chr17:7854461-7855425
Coord C2 exon
chr17:7854313-7854460
Length
965 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GGCTTGTCTTCTTCCTGCAGCCC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GATTATCACAAAATAATAAAAAACCCCATGGACATGGGGACTATCAAGAAACGCCTGGAACATAACTATTACTGGAGTGCCAGTGAATGTATGCAGGATTTCAACACCATGTTTACAAATTGTTATATTTATAACAAG
Seq A exon
GTAAAGAGCCCGGACAAGCACTTAGCTGGGGCACTGCCTAGGAAAAAAAACACAATTGTTACAGTACAAGTTTTAAACAGGGCAGCTCCTCTGTGCTGCAGGCCCTCTTTGCAAGGATTCAAGATGCCACCAGTTGGAACTGCGTTACTTGAAATGCACAGAGCTGTCTTTGTGCCATATCTTTCTTCCCTTGCAGTAGTTAAAATGGCAAATGTGCTTTATAATTATATGCATATTTCTGTTTTGGAGTTGCACAGCAAGTTTAGATTCCTTTTGTTCTCATTCAGGAGTTCAAGATGAGCTGAGGTTTGTGTAATGCTTTGCAGGTGTTTTGTGGGCTATTAGTGCTGTGTTGCACTAGTTGTCTAGCAGTAAACAGTGTCTCCTGCCTTCTAGCAGAGAGCAGTTCAGTAAGCTGTGTAACTCTGTCCTCTGCTGTATCTCATTCATACTTACACATCTTTAAATTGCCTATTATTGTTTTGGATTTGTCTTACTTTCTACTTTGTTAGGTTGTTAAAAGCTGGTATTCTTTGCTTTTTGCAATGGTTTGTCGTCATTGACCCATGCTGGAAAGCAAGTTGAAATAAACAAATTAATTAGTTTGAACCACAGGCTATATGTTTACACTCCTCTCTAGGACCTGTTGGCAAGCAGGGAGGATGGCTCATCTGTTCCAGTTTTCTGCTTCCACACTGATGCTTGTTATCAGGCTTCTGCTGGAGTCCTGATATCCTCTGGATGCTGTGCATTTAAAGCCTGTGATTATTACATTCTAGACTAGATTAGAAGAGCAGGAGAGCTGTATGCAAGAGAGGAAAGAGCTAATCTGTTATTGCTAGGGAACTGGATGCCATCATTTATTTGAAGGGCAGGCGTCACTGGGGATTTCAAAGTGTGATCTTGTACCTTTTTCTTCTGATGATACATGGATGACGCAGCTCAGGCTTGTCTTCTTCCTGCAG
Seq C2 exon
CCCACAGATGACATCGTCCTTATGGCCCAAGCCCTTGAGAAGATATTTCTGCAGAAGGTTGCTCAGATGCCTCAGGAGGAAGTCGAATTATTACCCCCAGTTCCTAAAGGCAAAGGTCGTAAGCCGTCAGTGGGCACACAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682:ENSGALT00000004226:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.460
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(51.7=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(11.5=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATGGGGACTATCAAGA
R:
CACTCTGTGTGCCCACTGAC
Band lengths:
255-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]