HsaINT0018490 @ hg38
Intron Retention
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134051562-134052443:-
Coord C1 exon
chr9:134052306-134052443
Coord A exon
chr9:134051710-134052305
Coord C2 exon
chr9:134051562-134051709
Length
596 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGGACTCTCTGTGTCTTCAGCCC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GATTATCATAAAATAATTAAAAACCCAATGGATATGGGGACTATTAAGAAGAGACTAGAAAATAATTATTATTGGAGTGCAAGCGAATGTATGCAGGACTTCAACACCATGTTTACAAATTGTTACATTTATAACAAG
Seq A exon
GTAAGAAGATGCGGGCCTGGCACGCCGCTTGCAGTAAGGATTGGGGCGCTGTGCAACGCAGTGGGCCTGGGCGCTTTGCAGCAGCTCTTGGGCAGGCCCAAAGCGCTTCACCTGGCTGGGTGCCGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTCGGCGGATCACTTGAGCTCAGGAGTTCAAGACCAGCCTGTGCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCAGGTGTGGTGGCAGGCACCTGTAATCCCAGCTACTCGGAAGGCTAAGGCAGGAGAATCACTTAAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAACAAAAAAAACAACACACACACACACACACACACACACACACATATATTCATTTTGTTCTCTCCTGCGCTGCCAAATCTGTTAACAAATTTTAAATATTTTTTTGAGCTACAACTAATAATGTCCTTTGCAAGCACACAGCTCCTTTCCTGACACGTGACCTGGACTCTCTGTGTCTTCAG
Seq C2 exon
CCCACAGATGACATAGTGCTAATGGCCCAAGCTTTAGAGAAAATTTTTCTACAAAAAGTGGCCCAGATGCCCCAAGAGGAAGTTGAATTATTACCCCCTGCTCCAAAGGGCAAAGGTCGGAAGCCGGCTGCGGGAGCCCAGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925:ENST00000303407:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(51.7=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(11.5=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGGATATGGGGACTATTAAGA
R:
GCTTCCGACCTTTGCCCTTT
Band lengths:
238-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development