GgaINT0123971 @ galGal3
Intron Retention
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7851028-7853313:-
Coord C1 exon
chr17:7853099-7853313
Coord A exon
chr17:7851400-7853098
Coord C2 exon
chr17:7851028-7851399
Length
1699 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTCTCCATCTGCTGTTTCAGAAA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GAACACAGCAAGCAGTGGCCGTGTCTTCCGTCTCCCCGCCGGCCCCGTTCCAGAGCGTCCCTCCAGCCGTGTCTCAGACGCCCGTCATCGCTGCCACCCCTGTGCCAACCATCACTGCTAATGTCCCACCTGTCACTGCCCCACCTGCCGCTGCTCCCCCTCCGCCTGCTGCTCCGATAATGCCTGTGGTTCCTCCTACGCCGCCAGTAGTCAAG
Seq A exon
GTAAACAGAGCTTGACCTCTTCCTCTTCACAAAGCAATATTGCTAAGCAGTGCTTTAATTTCATCCCCTTGCTGCTGGTTACGTGCATTATTTCTCTTTGCATTTGAGTCCTTGCTTCTCTGGCCATTGTTGTCCCTTTGGGATGTGCTCAGATGAGTGCTTGCTGTTGGGTTTGAGTGGGTTCGGCAAAGTTTTGCCAGTTTTACCACACCCCAACTCAGGTGATGTTGAGTGTAATTGCTCCAACTCAATTACAAGCTGTTATCTGACCATAGCCTTAGCCAGTGCTGATGCTCCATGAATCATAAGGCTATTGGGTAATAACGATCAAAATGGGAGAAATCTCCAAAGCATCTTTTCCCTCCAAATGAATCTGTTTTTCCGGGGACTGTTCCTTTAAGATTTGCACACTCCAGCACTAGGAGTGTTTCTCTCTGCTGTAAACCAGTTCAAGACAAGCCTGTCACTCCAGCTGGAGGAGATTGGTGTTGCCTGCAGGTTTTGGGTACATTAATTTTGTCTTCCTTACTGAGTAACCTTCTGGGAGGTGTCAATGGTGTTTTGCTATGTTAATTTACGTGTAAGTGAAAATGTTGCTTAAAATAATTGGAATTTTCCTGGCAAGCTGTATATTGCTTTAAGAAGAGATGGAACATAGCTTAGATAATTTTTTTTCTCTAAAATAAGAATTTAAGTGCAGAAGCATTGGCATTCCTGATTTGAGGTTGCATGGGCCAGTAGAGCTACAGAATTTTTTTCCTTATTTCACCCTACAGGCTGGGAATTACTTAAGGACATTGTAAATCCGATCTTGCAGCTATGCTGTCCTCCTCAGAAGCCTGTTTCATAATGCAATGTCTGACCAAATAATTTGCATCTGAGAACCACTTTAGTTTTAAAATTCAAGGATGAACCCAAAAATGAGTTTGCGAAATATGTACTGCAAAGATAATCCTGCTTGGGATTTACTTAAGACTTGCCTTAGATTTCCTTGGGGACCACTTCATTTTTTTTCCCCTTTTTCTTTTTTTTTGTTTCCTCCAGAACTGCTCCTTCATAGGAGCAAAAGAAAGAACTGACTGGACAATAACAGCTTGAATTAATGTGGGATGTATGTTTTATTTGCTTGAAGCGAAATCATTAAATTCTTAACTCTTGTCCATAATAAACAATCTACCTTAGCACATTCATTCACTAAGTAAAAGGGAGTGAAGGCTCATAGGTCTTTGGTGATTAATATGCTTTGGTTCAGAACTTATAGCCTGATCCTGCCACTGGGGACTCAGACATGTGGTTAAGTTACTGACACTTACTAAGTCACCATGCATCAGCTGAGCTGCAGTAATCGACTGGGCGCACTCCTTTCCTTTGGCAAACACGAGGTAAGAGTCCTTAGTTTAAATCTCAGTGAAATACATAGAGCTAACGCGTTTTGCATCCTGTTTGGGGTTGGGTTGGAGATGTGCAGGTGGCTGGTTACTGTGGCTCAGATGACATGCAGTAATACATCATGTTGTTGTCACTGAATTGCGTGTTGAAGCCTCTAGTCACAAGTCCCATTGATCCCAGTGAAATAATCACGTTTTCTGTCAGAGGACAGGCAGATCTCAGGAATGAGGATGAATTGTGCTAGGTTTCTGCTTAGCTCGCCGTGAGAACCGGGCTTGTGCTCATCAGGTCTCTCCATCTGCTGTTTCAG
Seq C2 exon
AAAAAGGGAGTGAAGCGGAAAGCAGACACGACCACCCCCACCACCTCCGTGATAACTGCCAGCCGGAGCGAGTCCCCCACGCCCCTCTCAGACCCCAAACAGGCCAAAATCATCGCTCGGCGTGAGAGCGGCGGCCGGCCCATCAAACCACCAAAGAAAGACCTTGAGGACGGAGAGGTCCCCCAGCATGCAGGGAAGAAGGGCAAACTGTCTGAGCACCTCAAGTACTGTGACAGCATTCTCAAGGAGATGCTTTCGAAGAAGCATGCAGCCTATGCATGGCCCTTTTACAAGCCCGTTGATGCAGAGGCCTTGGAATTACATGACTATCATGATATTATCAAACACCCCATGGATCTCAGTACTGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682:ENSGALT00000004226:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=NA C2=0.621
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCGATAATGCCTGTGG
R:
CTCTGCATCAACGGGCTTGTA
Band lengths:
356-2055
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]