HsaINT0018492 @ hg38
Intron Retention
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134048083-134050588:-
Coord C1 exon
chr9:134050374-134050588
Coord A exon
chr9:134048455-134050373
Coord C2 exon
chr9:134048083-134048454
Length
1919 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGTTATTTCACTGTCGCAGAAA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTACACAGCAAGTGGCGGCCGTGTCCTCTGTCTCCCCAGCGACCCCCTTTCAGAGCGTGCCCCCCACCGTCTCCCAGACGCCCGTCATCGCTGCCACCCCTGTACCAACCATCACTGCAAACGTCACGTCGGTCCCAGTCCCCCCAGCTGCCGCCCCACCTCCTCCTGCCACACCCATCGTCCCCGTGGTCCCTCCTACGCCGCCTGTCGTCAAG
Seq A exon
GTGAGCACCCTGAGTCCGGATGGGTGGGGCACCTGAGCCCGGCCAGGGTTCCTGAGGTCAGGGCAGGAGCAGCAGGCGGGGGGCCCCCACCTTTCCCTGAGTGCTGGCTCTTGGGAGTGTTTCTCTCTGCGCCCTGGGAGCTCAGGCCGTTGTTACTGACACAGATGAGGAGACCTAGGCCTGGGGAGCTGAAGGTCACACAGCTGGTAAGGGAGGGCCTGGCTGAACTTGAACCCCAGCTTCTCTGGCCAGAAGCCCTGGCCAAAGGCTTGGTCAAGGTGGGGAAGTTGTGGGAGAGAAGCCAGGGTGGGAGGGGTCCCGGTCCTCCCCTGCTCACACTCAGGAGAGTGGTGCCAGCTGTACCTACCTGGGTGCGTTGTGAGGTGCCAGCACCCAAGCTGGCCCCGCCTGTGGGCTCCACATGGGAGCATGGGGACCTGCCTGTCCTGCTCCCCACTTGGCTGGGAGCTTTTCTCAGTGGGCCCTGTTGGTCTTGGCAGGGAGTGGGTGCTCCCTGCAAGATTTGGGGCTGGCGAGGCCTGGTGAGTCTCCTGCTTTGGGCAGGGCCCGTGCCAGGCACTTATGTGTATTATCTTCTTCGATTTGATCCTCACAGCAACCCTCTGGGGCAGACAGTATTTCCCCCATCTTACAGATGAGGAAGCGGGCGCTCAGAGGGGTTAAATGGCTCGCCCAAGGTAAAATGCCACCTCCGTTGCTTCCCCTCCCCGTGGCCTTCACTGCCTGCACTTATGGGTGGCCCCTGGTCAAGCCGCCTCCCCCAGTGGGGGCTGTTTCTGGAGCATGTCCCATTTGCCACGGCCAGACGAGTCTGTCCCCGCTCCTATCCGCCCTGTGCGGCACGCGCCTGGCGCTTGGCAGCACGTGGGTGCCTGCCAAGTGTTTGTGGATAGCCGGCTCCGGCCCCTGCCAGTCTGAGGGCGGCGGCTTGGCTGGGCAGTGACTGTGGGTGGCTCTCTAGACGGCAGGTGCCGTGGGCTGGGAGCCGTGGCTCCCGCTGGCTCCTCTCCCGCTGGGCTAAGATTAGAAGCTGGCTGAGCTGGTCTCAGGGTGCACACTGAGCCCTGGCCCTGGAACGCTGAGGTGATGCCCATGGGTGCTGGGTGCTGAGGCCCTTGCAGGCTGCCCAGAGAGACCTGCACACCCCCAGGAGGCCTGGACGTTAAACATGCGCGTCTGCCTGGTGCCTGGCTCCGTCCCCAGGACACACCCACAGAAGGTTCTGTGGGTCATCTCCCTCCTCTCCTTGCTTGAAATGGCCTTCGGTGGCTCCCACTGCTGCTGGGATGGAGTCCAGACTTGCCCACTCAATCCCTGAGGTCCCTTGTTCCCAGAGCTGCTGTGGCTGCTTCATGCCTCCTGGTTGGGCTGCCCCTTGCCCTGTGTCTGGAATGCTCTCCTGCCTCCCTCTTGTCCCGCAAAACTTGTGTTTGTCCGCGGAGCCCCCGCTCTCAGGCCCTTGTCTGGAACTTTCCTGGAAGCAGGGAGTTCCTCCCAGGTCTCTGCAGCACCGAGGTCCCCGGGTCCTGGTCTGGGTGCTTGTTAGGTGTCTGGCGAATTGCATGCAGCACCTCACATGGCTTGGGGTGTGAGGTGCGAGCCCACCCGGGACCCCTGAGCCCTCGGGGCTAAGGGAGAGAGGTATCTCCCCTCGCCCAGGTGAGGGCGGGTTTCAGAGTTGATCCTGAGGGAGAGTCCCAGCCTCACCACTGCCAGCTGTGTGACCTTGGGCCAGTGACATGGCCCCTGAGCCTTGGTGTCCTCTCCTGTGGGGCCGTGCATGTGGCCGCTTAGCCCAGCGCCAGGCAGGCAGACAGTGCCCCAGAAACGCGGCTGCAGCGACATGCGTCTTCGGGGCCCCTGGTTTCCGGGGTTCACTGGTTATTTCACTGTCGCAG
Seq C2 exon
AAAAAGGGCGTGAAGCGGAAAGCAGACACAACCACTCCCACGACGTCGGCCATCACTGCCAGCCGGAGTGAGTCGCCCCCGCCGTTGTCAGACCCCAAGCAGGCCAAAGTGGTGGCCCGGCGGGAGAGTGGTGGCCGCCCCATCAAGCCTCCCAAGAAGGACCTGGAGGACGGCGAGGTGCCCCAGCACGCAGGCAAGAAGGGCAAGCTGTCGGAGCACCTACGCTACTGCGACAGCATCCTCAGGGAGATGCTATCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAGCCAGTGGATGCCGAGGCCCTGGAGCTGCACGACTACCACGACATCATCAAGCACCCGATGGACCTCAGCACCGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925:ENST00000303407:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACTGCAAACGTCACGTC
R:
ATCTCCCTGAGGATGCTGTCG
Band lengths:
357-2276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development