HsaEX0008415 @ hg38
Exon Skipping
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134048083-134050588:-
Coord C1 exon
chr9:134050374-134050588
Coord A exon
chr9:134049676-134049757
Coord C2 exon
chr9:134048083-134048454
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTCGATTTGATCCTCACAGCAA
3' ss Score
5.43
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTACACAGCAAGTGGCGGCCGTGTCCTCTGTCTCCCCAGCGACCCCCTTTCAGAGCGTGCCCCCCACCGTCTCCCAGACGCCCGTCATCGCTGCCACCCCTGTACCAACCATCACTGCAAACGTCACGTCGGTCCCAGTCCCCCCAGCTGCCGCCCCACCTCCTCCTGCCACACCCATCGTCCCCGTGGTCCCTCCTACGCCGCCTGTCGTCAAG
Seq A exon
CAACCCTCTGGGGCAGACAGTATTTCCCCCATCTTACAGATGAGGAAGCGGGCGCTCAGAGGGGTTAAATGGCTCGCCCAAG
Seq C2 exon
AAAAAGGGCGTGAAGCGGAAAGCAGACACAACCACTCCCACGACGTCGGCCATCACTGCCAGCCGGAGTGAGTCGCCCCCGCCGTTGTCAGACCCCAAGCAGGCCAAAGTGGTGGCCCGGCGGGAGAGTGGTGGCCGCCCCATCAAGCCTCCCAAGAAGGACCTGGAGGACGGCGAGGTGCCCCAGCACGCAGGCAAGAAGGGCAAGCTGTCGGAGCACCTACGCTACTGCGACAGCATCCTCAGGGAGATGCTATCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAGCCAGTGGATGCCGAGGCCCTGGAGCTGCACGACTACCACGACATCATCAAGCACCCGATGGACCTCAGCACCGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925-'13-19,'13-18,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.857 C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
ENST00000303407fB864
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGTACCAACCATCACT
R:
GACGTCGTGGGAGTGGTTG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development