BtaEX0005732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104875085-104877300:-
Coord C1 exon
chr11:104877086-104877300
Coord A exon
chr11:104876543-104876624
Coord C2 exon
chr11:104875085-104875456
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTCCGGTTTGACCCTCACAGCAA
3' ss Score
5.67
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GCTCGCAGCAGGTGGCGGCCGTGTCCTCCGTGTGCCCGGCGACCCCCTTCCAGAGCGTCCCCCCCACGGTCTCCCAGACGCCCGTCATCGCCGCCACCCCCGTGCCAACCATCACCGCAAACGCCACGCCGGTCCCTGTCCCCCCGGCCGCCGCCCCGCCTCCCCCTGCCACGCCCATCATCCCCGTGGTCCCTCCCACGCCGCCTGTCGTAAAG
Seq A exon
CAACCCTCGGGGGCAGGCAGTGTTTCCCCCATCTTTCAGATGAGGAGGCAGGCGCTCAGAGGGGTTAAATGGCTCCCCCAAG
Seq C2 exon
AAGAAGGGCGTGAAGCGGAAAGCAGATACCACCACGCCCACGACGTCCGCCATCACGGCCAGCCGCAGCGAGTCGCCCCCGCCGCTCTCGGACCCCAAGCAGGCCAAGGTGGTGGCGCGGCGGGAGAGCGGGGGCCGCCCCATCAAGCCGCCCAAGAAGGACCTGGAGGACGGTGAGGTGCCGCAGCACGCGGGCAAGAAGGGCCGGCTCTCTGAGCACCTGCGCCACTGCGACAGCATCCTCAAGGAAATGCTCTCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAGCCGGTGGACGCCGAGGCCCTGGAGCTGCACGACTACCACGACATCATCAAGCACCCGATGGACCTGAGCACTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.964 C2=0.758
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
ENSBTAT00000013992fB1046
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACGGTCTCCCAGAC
R:
TATCTGCTTTCCGCTTCACGC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development