RnoEX0015114 @ rn6
Exon Skipping
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:6009209-6011520:-
Coord C1 exon
chr3:6011306-6011520
Coord A exon
chr3:6010667-6010745
Coord C2 exon
chr3:6009209-6009580
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTTCAATTTAATCCTCACAGCGA
3' ss Score
5.71
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGCACAACAAATGGGAGCTGTGTCCTCGGTCTCCCCAGCACCCCCCTTCCAGAACATACCCCCCACCGTATCCCAGACACCCGTCATTGCCGCCACCCCTGTACCAACCATCACTGCAAACGTCACGTCAGTTCCAGTCCCCCCACCCGCCGCACCGCCTCCTCCTGCGACACCCATCGTCCCAGTGGTCCCTCCCACACCGCCTGTAGTCAAG
Seq A exon
CGACCCTCTGGGGCAGGCAGTAGTCCCCCCTCTTACAGATGAGGAAACGGGCGCTCAGGGGTTAAATGGCTCTCCCAAG
Seq C2 exon
AAAAAGGGCGTGAAGCGGAAAGCAGACACAACCACACCCACAACGTCCGCCATCACTGCCAGCCGGAGTGAGTCTCCCCCGCCACTTTCAGAGCCCAAGCAAGCCAAGGTAGTAGCCCGAAGAGAGAGCGGGGGTCGCCCCATCAAACCTCCCAAGAAGGACCTGGAAGATGGTGAGGTCCCACAGCACGCGGGTAAAAAGGGAAAACTGTCCGAGCACCTGCGGCATTGTGACAGCATCCTCCGGGAGATGCTGTCCAAGAAGCACGCTGCCTATGCGTGGCCCTTTTACAAGCCAGTGGATGCCGAGGCACTGGAGCTGCATGACTACCATGACATAATCAAACACCCCATGGACCTTAGCACAGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=1.000 C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
ENSRNOT00000084491fB2074
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCCCAGACACCCGTCAT
R:
TTGTGTCTGCTTTCCGCTTCA
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]