GgaINT0124187 @ galGal3
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6516161-6519084:+
Coord C1 exon
chr17:6516161-6516232
Coord A exon
chr17:6516233-6519026
Coord C2 exon
chr17:6519027-6519084
Length
2794 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGTCTTCTTTCCTTTGTAGACA
3' ss Score
11.33
Exon sequences
Seq C1 exon
TAATCGGCAGGGGAGGTGAGCAGATCTCACGGATTCAGATCGAGTCTGGCTGCAAAATTCAAATTGCTCCAG
Seq A exon
GTAAGAGCCTCTTTTGTGGTGGGTGAGCAGGTTTTCTTGTTGGAGAATGTCGTGTCCGTTGTTTCAGGTGCCTTGTCTTGGTCATCATTTGTGAATGGTGGTAATGCATTATACAGTAGGCTGAAGTGTTGGGAGGGCCGTTTGTAGGACTGGTGTCCCTGAGAAAACAGGTTTGTCAGGTGGTATGGGGAATCGAATAGTTAAGAAACTGTCTTTAACCAACTGATGGGTACAGTGCAAATGGACAATCCATGTTTTTTAAAGCAGAAATTGCTTCCGCTTAGTTTTCTTCTGGCAGTACCATTTAGCTCAGCTCATGCAATTTATCTCTGATTAGTCTGCTCTGCTCCAGGTCCTGGCAGAAAACATTTCAGTAGGGTGGCAGCACTTCTTCGTACAATTTGCCTTGCACTGAAAAAATGGGAGTGTGCCGTTTGCTCTGCTAGTGCTGCAGCCTGTTTGCTTTGGGGAAGGCTGTACTAGTGCTGCACAGGATGCTGTTGATGAATGTAATCTAGGTTTTAAGCCTCCCTTTAGTTGATGGTGAGGGCTTTAAAATAATACGGATATCCAGCAAATCATTTAAAATATACTGACCCTGGATGTCTCCTGCTCTGTTTGCAGAGGGGAGTGTTTTCCTTAGTACTGAAATTGCTGCCATTTCTTAGTTCTTGAGTATTAATGTAGGACATTTTTAAGCTTCTAGCCCATGTGAGGAGTTAGCACTTTTCTGCCTGCCTGGCTACTGACGGCAGTTTGGGTGCTAAGAGTTGGGAAGTATCTGATCCCCGTTGTCTTCTTTCCTTTGTAGACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACACCAGAGAGCATTGAGTGAGTTCTGATTTTATTCTTCTCCTTTCTCCTTCTCTCTTCTCCCTAATGCTGTGCTCTGTCAGTGGTGCTACTTGGTTAGCCACACCAGCAAATGCTGGCCTAGAGAAACTTGAGGGTCCTGGAACACTGAGCCTCTTGGTCTGATGCTTTGAATTGTGCACCTCAAAGGCATTGTTCCAGTTTCAGTTTGAACCCTCTGCANNNNNNNNNNCAGAGTATTTGAATCAGGCTTGAGAAATTCCACCTTTTGCCTTGTTTTGTGAGAAAGTTGAGAGAGGGCAGCACTCTGATCTTTGTACAGCCTCAGATCACCATCCCTTGAGCTGTCTTGAGTGAATGCCTGCTTGCAACGGATGGTTTCATACCATTTCTTCAAGTTTTTAGAGAGAATACTGTCTGTGTGCGTTGCCTGATGTGCCTGGGTATGAAAAAGGGAACACCCTGCTCTTGACTGAGCAGGGAACTGGTGGCTTTCTTCTACCTATTAGAGAAGTGTTCTTGGAAATGGGCAGTAAAGGGATGTGTTGATAATAGCAGTCCTTATGATGAAGGGAAGATGTGTCAGCTACTTCTGACGTGCTAAAAATGCTTAGAGAAGGTATCTTTGCTTTTTCGTGTCTGTCTCTTTTCATGAGGAGCAGAAGAACCCAGTCTTCCACTGGTTGCTGCTACAGTGTCCTTGCCTTGCTTCCTGGTGTAGCTTTAGCACCTGCTGCTTGGGGCAGAGGCTGTGTCAGAGCAGTGTTCTGGTGCTGCTGGTGAGGGCGGGCAGAGAAGAGCAAGGCATTGTCTGTGAGGGATCAGAGTGGTTCACCAGTGTGCTGTGTTAGTGTTGAAGCACCGTCTGTTTTGTCTTGATCGAGAAGGAGAACAGAGCTTGAGGGGTTTTTTTTACCAAATATTACATATACGTGAGAGAAATCAGTTTAGAGGACTTCAGGATGTAGAGCATCTTCATTCAAATTGTGCACCCCAAATGTAACAGCTCCTTAACTTCCAAAGATGTTGGAGCATGCTGCTGCTCTTTCTTCTCTCTTCCCCTTACAAAAAATCAAGCTGCTTATAAGTAATCACGATAGGGGAAATTGGATACCGCCCTCCCCCCCCCCCAAAATAAAGTTGTGCTAACTGNNNNNNNNNNTTCTTGTTGGAGAATGTCGTGTCCGTTGTTTCAGGTGCCTTGTCTTGGTCATCATTTGTGAATGGTGGTAATGCATTATACAGTAGGCTGAAGTGTTGGGAGGGCCGTTTGTAGGACTGGTGTCCCTGAGAAAACAGGTTTGTCAGGTGGTATGGGGAATCGAATAGTTAAGAAACTGTCTTTAACCAACTGATGGGTACAGTGCGAATGGACAATCCATGTTTTTTAAAGCAGAAATTGCTTCCGCTTAGTTTTCTCCTAGCAGTACCATTTAGCTCAGCTCATGCAATTTATCTCTGATTAGTCTGCTCTGCTCCAGGTCCTGGCAGAAAACATTTCAGTAGGGTGGCAGCACTTCTTCGTACAATTTGCCTTGCACTGAAAAAATGGGAGTGTGCCGTTTGCTCTGCTAGTGCTGCAGCCTGTTTGCTTTGGGGAAGGCTGTACTACAAGTGCTGCACAGGACGTTGTTGATGAATGTAATCTAGGTTTTAAGCCTCCCTTTAGTTGATGGTGAGGGCTTTAAAATAATACGGATATCCAGCAAATCATTTAAAATATACTGACCCTGGATGTCTCCTGCTCTGTTTGCAGAGGGGAGTGTTTTCCTTAGTACTGAAATTGCTGCCATTTCTTAGTTCTTGAGTATTAATGTAGGATATTTTTAAGCTTCTAGCCCATGTGAGGAGTTAGCACTTTTCTGCCTGCCTGGCTACTGACGGCAGTTTGGGTGCTAAGAGTTGGGAAGTATCTGATCCCCGTTGTCTTCTTTCCTTTGTAG
Seq C2 exon
ACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACGCCAGAGAGCATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]